Expanding the toolbox of probiotic Escherichia coli Nissle 1917 for synthetic biology

Biotechnol J. 2024 Jan;19(1):e2300327. doi: 10.1002/biot.202300327. Epub 2023 Oct 13.

Abstract

Escherichia coli Nissle 1917 (EcN) is a probiotic microbe that has the potential to be developed as a promising chassis for synthetic biology applications. However, the molecular tools and techniques for utilizing EcN remain to be further explored. To address this opportunity, the EcN-based toolbox was systematically expanded, enabling EcN as a powerful platform for more applications. First, two EcN cryptic plasmids and other compatible plasmids were genetically engineered to enrich the manipulable plasmid toolbox for multiple gene coexpression. Next, two EcN-based technologies were developed, including the conjugation strategy for DNA transfer, and quantification of protein expression capability. Finally, the EcN-based applications were further expanded by developing EcN native integrase-mediated genetic engineering and establishing an in vitro cell-free protein synthesis (CFPS) system. Overall, this study expanded the toolbox for manipulating and making full use of EcN as a commonly used probiotic chassis, providing several simplified, dependable, and predictable strategies for researchers working in synthetic biology fields.

Keywords: Escherichia coli Nissle 1917; cell-free protein synthesis; cryptic plasmid; integrase; synthetic biology.

MeSH terms

  • Escherichia coli* / genetics
  • Escherichia coli* / metabolism
  • Genetic Engineering / methods
  • Plasmids / genetics
  • Probiotics*
  • Synthetic Biology