NMR-Based Characterization of the Interaction between Yeast Oxa1-CTD and Ribosomes

Int J Mol Sci. 2023 Sep 28;24(19):14657. doi: 10.3390/ijms241914657.

Abstract

In mitochondria, the major subunits of oxidative phosphorylation complexes are translated by the mitochondrial ribosome (mito-ribosome). The correct insertion and assembly of these subunits into the inner mitochondrial membrane (IMM) are facilitated by mitochondrial oxidase assembly protein 1 (Oxa1) during the translation process. This co-translational insertion process involves an association between the mito-ribosome and the C-terminus of Oxa1 (Oxa1-CTD) Nuclear magnetic resonance (NMR) methods were mainly used to investigate the structural characterization of yeast Oxa1-CTD and its mode of interaction with the E. coli 70S ribosome. Oxa1-CTD forms a transient α-helical structure within the residues P342-Q385, which were reported to form an α-helix when combining with the ribosome. Two conserved contact sites that could interact with the ribosome were further identified. The first site was located on the very end of the N-terminus (V321-I327), and the second one encompassed a stretch of amino acid residues I348-Q370. Based on our discoveries and previous reports, a model has been proposed in which Oxa1-CTD interacts with ribosomes, accompanied by transient-to-stable transitions at the second contact site. These observations may enhance our understanding of the potential role of Oxa1-CTD in facilitating the assembly of oxidative phosphorylation complexes and provide insight into the structural characteristics of Oxa1-CTD.

Keywords: C-terminus; NMR; Oxa1 insertase; interactions; ribosome; structural transitions.

MeSH terms

  • Escherichia coli* / genetics
  • Escherichia coli* / metabolism
  • Magnetic Resonance Spectroscopy
  • Mitochondria / metabolism
  • Mitochondrial Proteins* / chemistry
  • Mitochondrial Proteins* / metabolism
  • Ribosomes* / metabolism
  • Saccharomyces cerevisiae* / chemistry
  • Saccharomyces cerevisiae* / metabolism

Substances

  • Mitochondrial Proteins
  • OXA1 protein

Grants and funding

This research was funded by grants from the Special Foundation of the President of the Chinese Academy of Sciences (grant no. YZJJ2021QN33, YZJJ2023QN41) and the Major/Innovative Program of the Development Foundation of the Hefei Center for Physical Science and Technology (grant no. 2021HSC-CIP001).