Synergistic co-utilization of biomass-derived sugars enhances aromatic amino acid production by engineered Escherichia coli

Biotechnol Bioeng. 2024 Feb;121(2):784-794. doi: 10.1002/bit.28585. Epub 2023 Nov 5.

Abstract

Efficient co-utilization of mixed sugar feedstocks remains a biomanufacturing challenge, thus motivating ongoing efforts to engineer microbes for improved conversion of glucose-xylose mixtures. This study focuses on enhancing phenylalanine production by engineering Escherichia coli to efficiently co-utilize glucose and xylose. Flux balance analysis identified E4P flux as a bottleneck which could be alleviated by increasing the xylose-to-glucose flux ratio. A mutant copy of the xylose-specific activator (XylR) was then introduced into the phenylalanine-overproducing E. coli NST74, which relieved carbon catabolite repression and enabled efficient glucose-xylose co-utilization. Carbon contribution analysis through 13 C-fingerprinting showed a higher preference for xylose in the engineered strain (NST74X), suggesting superior catabolism of xylose relative to glucose. As a result, NST74X produced 1.76 g/L phenylalanine from a model glucose-xylose mixture; a threefold increase over NST74. Then, using biomass-derived sugars, NST74X produced 1.2 g/L phenylalanine, representing a 1.9-fold increase over NST74. Notably, and consistent with the carbon contribution analysis, the xylR* mutation resulted in a fourfold greater maximum rate of xylose consumption without significantly impeding the maximum rate of total sugar consumption (0.87 vs. 0.70 g/L-h). This study presents a novel strategy for enhancing phenylalanine production through the co-utilization of glucose and xylose in aerobic E. coli cultures, and highlights the potential synergistic benefits associated with using substrate mixtures over single substrates when targeting specific products.

Keywords: aromatic biochemicals; carbon catabolite repression; corn stover hydrolysate; flux balance analysis; phenylalanine; sugar co-utilization.

MeSH terms

  • Amino Acids, Aromatic / metabolism
  • Biomass
  • Carbon / metabolism
  • Escherichia coli Proteins* / metabolism
  • Escherichia coli* / genetics
  • Escherichia coli* / metabolism
  • Fermentation
  • Glucose / metabolism
  • Phenylalanine / metabolism
  • Sugars / metabolism
  • Transcription Factors / genetics
  • Xylose / metabolism

Substances

  • Sugars
  • Xylose
  • Glucose
  • Amino Acids, Aromatic
  • Phenylalanine
  • Carbon
  • XylR protein, E coli
  • Transcription Factors
  • Escherichia coli Proteins