Discovery of type II polyketide synthase-like enzymes for the biosynthesis of cispentacin

Nat Commun. 2023 Dec 6;14(1):8065. doi: 10.1038/s41467-023-43731-z.

Abstract

Type II polyketide synthases (PKSs) normally synthesize polycyclic aromatic compounds in nature, and the potential to elaborate further diverse skeletons was recently revealed by the discovery of a polyene subgroup. Here, we show a type II PKS machinery for the biosynthesis of a five-membered nonaromatic skeleton contained in the nonproteinogenic amino acid cispentacin and the plant toxin coronatine. We successfully produce cispentacin in a heterologous host and reconstruct its biosynthesis using seven recombinant proteins in vitro. Biochemical analyses of each protein reveal the unique enzymatic reactions, indicating that a heterodimer of type II PKS-like enzymes (AmcF-AmcG) catalyzes a single C2 elongation as well as a subsequent cyclization on the acyl carrier protein (AmcB) to form a key intermediate with a five-membered ring. The subsequent reactions, which are catalyzed by a collection of type II PKS-like enzymes, are also peculiar. This work further expands the definition of type II PKS and illuminates an unexplored genetic resource for natural products.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acyltransferases* / metabolism
  • Cyclization
  • Polyketide Synthases* / genetics
  • Polyketide Synthases* / metabolism
  • Recombinant Proteins / metabolism

Substances

  • Polyketide Synthases
  • cispentacin
  • Acyltransferases
  • Recombinant Proteins

Associated data

  • PDB/6kxd
  • PDB/6kxf
  • PDB/6qsp
  • PDB/1mka
  • PDB/6n3p
  • GENBANK/LC389220