Near-term forecasting of Covid-19 cases and hospitalisations in Aotearoa New Zealand

PLoS Comput Biol. 2024 Jan 8;20(1):e1011752. doi: 10.1371/journal.pcbi.1011752. eCollection 2024 Jan.

Abstract

Near-term forecasting of infectious disease incidence and consequent demand for acute healthcare services can support capacity planning and public health responses. Despite well-developed scenario modelling to support the Covid-19 response, Aotearoa New Zealand lacks advanced infectious disease forecasting capacity. We develop a model using Aotearoa New Zealand's unique Covid-19 data streams to predict reported Covid-19 cases, hospital admissions and hospital occupancy. The method combines a semi-mechanistic model for disease transmission to predict cases with Gaussian process regression models to predict the fraction of reported cases that will require hospital treatment. We evaluate forecast performance against out-of-sample data over the period from 2 October 2022 to 23 July 2023. Our results show that forecast performance is reasonably good over a 1-3 week time horizon, although generally deteriorates as the time horizon is lengthened. The model has been operationalised to provide weekly national and regional forecasts in real-time. This study is an important step towards development of more sophisticated situational awareness and infectious disease forecasting tools in Aotearoa New Zealand.

MeSH terms

  • COVID-19* / epidemiology
  • Communicable Diseases*
  • Forecasting
  • Hospitalization
  • Humans
  • New Zealand / epidemiology

Grants and funding

This research was funded by a grant from the New Zealand Department of the Prime Minister and Cabinet and Ministry of Health to MJP, LW and OJM. The funders played no role in the methodology design, data analysis, preparation of the manuscript or decision to publish. The Ministry of Health was responsible for collecting and supplying the data analysed in the study. URL of funders’ websites: https://www.dpmc.govt.nz/https://www.health.govt.nz/.