q-RASTR modelling for prediction of diverse toxic chemicals towards T. pyriformis

SAR QSAR Environ Res. 2024 Jan;35(1):11-30. doi: 10.1080/1062936X.2023.2298452. Epub 2024 Jan 29.

Abstract

A series of diverse organic compounds impose serious detrimental effects on the health of living organisms and the environment. Determination of the structural aspects of compounds that impart toxicity and evaluation of the same is crucial before public usage. The present study aims to determine the structural characteristics of compounds for Tetrahymena pyriformis toxicity using the q-RASTR (Quantitative Read Across Structure-Toxicity Relationship) model. It was developed using RASTR and 2-D descriptors for a dataset of 1792 compounds with defined endpoint (pIGC50) against a model organism, T. pyriformis. For the current study, the whole dataset was divided based on activity/property into the training and test sets, and the q-RASTR model was developed employing six descriptors (three latent variables) having r2, Q2F1 and Q2 values of 0.739, 0.767, and 0.735, respectively. The generated model was thoroughly validated using internationally recognized internal and external validation criteria to assess the model's dependability and predictability. It was highlighted that high molecular weight, aromatic hydroxyls, nitrogen, double bonds, and hydrophobicity increase the toxicity of organic compounds. The current study demonstrates the applicability of the RASTR algorithm in QSTR model development for the prediction of toxic chemicals (pIGC50) towards T. pyriformis.

Keywords: PLS; Q-RASTR; QSTR; T. pyriformis; read-across algorithm; toxicity prediction.

MeSH terms

  • Algorithms
  • Organic Chemicals / toxicity
  • Quantitative Structure-Activity Relationship*
  • Tetrahymena pyriformis*

Substances

  • Organic Chemicals