Dissociation kinetics of 19 base paired oligonucleotide-DNA duplexes containing different single mismatched base pairs

Nucleic Acids Res. 1987 Jan 26;15(2):797-811. doi: 10.1093/nar/15.2.797.

Abstract

The dissociation kinetics of 19 base paired oligonucleotide-DNA duplex containing a various single mismatched base pair are studied on dried agarose gels. The kinetics of the dissociation are first order under our experimental conditions. The incorporation of a single mismatched base pair destabilizes the DNA duplexes to some extent, the amount depending on the nature of the mismatched base pair. G-T and G-A mismatches slightly destabilize a duplex, while A-A, T-T, C-T and C-A mismatches significantly destabilize it. The activation energy for the overall dissociation processes for these oligonucleotide-DNA duplexes containing 19 base pairs is 52 +/- 2 Kcal mol-1 as determined from the slope of Arrhenius plot.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Composition*
  • DNA*
  • Genes
  • Globins / genetics
  • Humans
  • Kinetics
  • Nucleic Acid Hybridization*
  • Oligodeoxyribonucleotides*
  • Plasmids
  • Thermodynamics

Substances

  • Oligodeoxyribonucleotides
  • Globins
  • DNA