Systematic analysis of PANoptosis-related genes identifies XIAP as a functional oncogene in breast cancer

Gene. 2024 Jun 20:912:148355. doi: 10.1016/j.gene.2024.148355. Epub 2024 Mar 10.

Abstract

Background: Breast cancer (BC) is the most prevalent malignant disease affecting women globally. PANoptosis, a novel form of cell death combining features of pyroptosis, apoptosis, and necroptosis, has recently gained attention. However, its precise function in BC and the predictive values of PANoptosis-related genes remain unclear.

Methods: We used the expression data and clinical information of BC tissues or normal breast tissues from public databases, and then successfully developed and verified a BC PANoptosis-related risk model through a combination of univariate Cox regression, least absolute shrinkage and selection operator (LASSO) regression, and Kaplan-Meier (KM) analysis. A nomogram was constructed to estimate survival probability, and its accuracy was assessed using calibration curves.

Results: Among 37 PANoptosis-related genes, we identified 4 differentially expressed genes related to overall survival (OS). Next, a risk model incorporating these four PANoptosis-related genes was established. Patients were stratified into low/high-risk groups based on the median risk score, with the low-risk group showing better prognoses and higher levels of immune infiltration. Utilizing the risk score and clinical features, we developed a nomogram to predict 1-, 3- and 5-year survival probability. X-linked inhibitor of apoptosis protein (XIAP) emerged as a potentially risky factor with the highest hazard ratio. In vitro experiments demonstrated that XIAP inhibition enhances the antitumor effect of doxorubicin through the PANoptosis pathway.

Conclusion: PANoptosis holds an important role in BC prognosis and treatment.

Keywords: Breast cancer (BC); Examine the immune microenvironment; Nomogram; PANoptosis; Prognostic model; X-linked inhibitor of apoptosis protein (XIAP).

MeSH terms

  • Apoptosis / genetics
  • Breast Neoplasms* / genetics
  • Doxorubicin
  • Female
  • Humans
  • Oncogenes / genetics
  • X-Linked Inhibitor of Apoptosis Protein / genetics

Substances

  • X-Linked Inhibitor of Apoptosis Protein
  • Doxorubicin
  • XIAP protein, human