Combination of EZH2 and ATM inhibition in BAP1-deficient mesothelioma

Br J Cancer. 2024 May;130(11):1855-1865. doi: 10.1038/s41416-024-02661-3. Epub 2024 Mar 22.

Abstract

Background: More than half of mesothelioma tumours show alterations in the tumour suppressor gene BAP1. BAP1-deficient mesothelioma is shown to be sensitive to EZH2 inhibition in preclinical settings but only showed modest efficacy in clinical trial. Adding a second inhibitor could potentially elevate EZH2i treatment efficacy while preventing acquired resistance at the same time.

Methods: A focused drug synergy screen consisting of 20 drugs was performed by combining EZH2 inhibition with a panel of anti-cancer compounds in mesothelioma cell lines. The compounds used are under preclinical investigation or already used in the clinic. The synergistic potential of the combinations was assessed by using the Bliss model. To validate our findings, in vivo xenograft experiments were performed.

Results: Combining EZH2i with ATMi was found to have synergistic potential against BAP1-deficient mesothelioma in our drug screen, which was validated in clonogenicity assays. Tumour growth inhibition potential was significantly increased in BAP1-deficient xenografts. In addition, we observe lower ATM levels upon depletion of BAP1 and hypothesise that this might be mediated by E2F1.

Conclusions: We demonstrated the efficacy of the combination of ATM and EZH2 inhibition against BAP1-deficient mesothelioma in preclinical models, indicating the potential of this combination as a novel treatment modality using BAP1 as a biomarker.

MeSH terms

  • Animals
  • Ataxia Telangiectasia Mutated Proteins* / antagonists & inhibitors
  • Ataxia Telangiectasia Mutated Proteins* / deficiency
  • Ataxia Telangiectasia Mutated Proteins* / genetics
  • Cell Line, Tumor
  • Drug Synergism
  • Enhancer of Zeste Homolog 2 Protein* / antagonists & inhibitors
  • Enhancer of Zeste Homolog 2 Protein* / genetics
  • Female
  • Humans
  • Mesothelioma* / drug therapy
  • Mesothelioma* / genetics
  • Mesothelioma* / pathology
  • Mice
  • Tumor Suppressor Proteins* / deficiency
  • Tumor Suppressor Proteins* / genetics
  • Ubiquitin Thiolesterase* / antagonists & inhibitors
  • Ubiquitin Thiolesterase* / deficiency
  • Ubiquitin Thiolesterase* / genetics
  • Xenograft Model Antitumor Assays*

Substances

  • Tumor Suppressor Proteins
  • BAP1 protein, human
  • Enhancer of Zeste Homolog 2 Protein
  • Ubiquitin Thiolesterase
  • EZH2 protein, human
  • Ataxia Telangiectasia Mutated Proteins
  • ATM protein, human