Targetable leukaemia dependency on noncanonical PI3Kγ signalling

Nature. 2024 Jun;630(8015):198-205. doi: 10.1038/s41586-024-07410-3. Epub 2024 May 8.

Abstract

Phosphoinositide-3-kinase-γ (PI3Kγ) is implicated as a target to repolarize tumour-associated macrophages and promote antitumour immune responses in solid cancers1-4. However, cancer cell-intrinsic roles of PI3Kγ are unclear. Here, by integrating unbiased genome-wide CRISPR interference screening with functional analyses across acute leukaemias, we define a selective dependency on the PI3Kγ complex in a high-risk subset that includes myeloid, lymphoid and dendritic lineages. This dependency is characterized by innate inflammatory signalling and activation of phosphoinositide 3-kinase regulatory subunit 5 (PIK3R5), which encodes a regulatory subunit of PI3Kγ5 and stabilizes the active enzymatic complex. We identify p21 (RAC1)-activated kinase 1 (PAK1) as a noncanonical substrate of PI3Kγ that mediates this cell-intrinsic dependency and find that dephosphorylation of PAK1 by PI3Kγ inhibition impairs mitochondrial oxidative phosphorylation. Treatment with the selective PI3Kγ inhibitor eganelisib is effective in leukaemias with activated PIK3R5. In addition, the combination of eganelisib and cytarabine prolongs survival over either agent alone, even in patient-derived leukaemia xenografts with low baseline PIK3R5 expression, as residual leukaemia cells after cytarabine treatment have elevated G protein-coupled purinergic receptor activity and PAK1 phosphorylation. Together, our study reveals a targetable dependency on PI3Kγ-PAK1 signalling that is amenable to near-term evaluation in patients with acute leukaemia.

MeSH terms

  • Animals
  • Cell Line
  • Class Ib Phosphatidylinositol 3-Kinase* / genetics
  • Class Ib Phosphatidylinositol 3-Kinase* / metabolism
  • Cytarabine / pharmacology
  • Cytarabine / therapeutic use
  • Humans
  • Leukemia* / drug therapy
  • Leukemia* / enzymology
  • Leukemia* / genetics
  • Leukemia* / metabolism
  • Mice
  • Mitochondria / drug effects
  • Mitochondria / metabolism
  • Oxidative Phosphorylation / drug effects
  • Phosphorylation
  • Signal Transduction*
  • Xenograft Model Antitumor Assays
  • p21-Activated Kinases* / antagonists & inhibitors
  • p21-Activated Kinases* / metabolism

Substances

  • Class Ib Phosphatidylinositol 3-Kinase
  • Cytarabine
  • p21-Activated Kinases
  • PAK1 protein, human
  • PIK3CG protein, human
  • RAC1 protein, human