In-vitro and in-silico analyses of the thrombolytic potential of green kiwifruit

Sci Rep. 2024 Jun 14;14(1):13799. doi: 10.1038/s41598-024-64160-y.

Abstract

Cardiovascular diseases (CVDs), mainly caused by thrombosis complications, are the leading cause of mortality worldwide, making the development of alternative treatments highly desirable. In this study, the thrombolytic potential of green kiwifruit (Actinidia deliciosa cultivar Hayward) was assessed using in-vitro and in-silico approaches. The crude green kiwifruit extract demonstrated the ability to reduce blood clots significantly by 73.0 ± 1.12% (P < 0.01) within 6 h, with rapid degradation of Aα and Bβ fibrin chains followed by the γ chain in fibrinolytic assays. Molecular docking revealed six favorable conformations for the kiwifruit enzyme actinidin (ADHact) and fibrin chains, supported by spontaneous binding energies and distances. Moreover, molecular dynamics simulation confirmed the binding stability of the complexes of these conformations, as indicated by the stable binding affinity, high number of hydrogen bonds, and consistent distances between the catalytic residue Cys25 of ADHact and the peptide bond. The better overall binding affinity of ADHact to fibrin chains Aα and Bβ may contribute to their faster degradation, supporting the fibrinolytic results. In conclusion, this study demonstrated the thrombolytic potential of the green kiwifruit-derived enzyme and highlighted its potential role as a natural plant-based prophylactic and therapeutic agent for CVDs.

Keywords: Actinidin; Fibrinolytic activity; Green kiwifruit; Molecular docking; Molecular dynamics; Thrombolysis.

MeSH terms

  • Actinidia* / chemistry
  • Animals
  • Computer Simulation
  • Cysteine Endopeptidases / chemistry
  • Cysteine Endopeptidases / metabolism
  • Fibrin / chemistry
  • Fibrin / metabolism
  • Fibrinolytic Agents* / chemistry
  • Fibrinolytic Agents* / pharmacology
  • Fruit / chemistry
  • Humans
  • Molecular Docking Simulation*
  • Molecular Dynamics Simulation*
  • Plant Extracts / chemistry
  • Plant Extracts / pharmacology

Substances

  • Fibrinolytic Agents
  • Plant Extracts
  • actinidain
  • Fibrin
  • Cysteine Endopeptidases