Stage-specific GATA3 induction promotes ILC2 development after lineage commitment

Nat Commun. 2024 Jul 5;15(1):5610. doi: 10.1038/s41467-024-49881-y.

Abstract

Group 2 innate lymphoid cells (ILC2s) are a subset of innate lymphocytes that produce type 2 cytokines, including IL-4, IL-5, and IL-13. GATA3 is a critical transcription factor for ILC2 development at multiple stages. However, when and how GATA3 is induced to the levels required for ILC2 development remains unclear. Herein, we identify ILC2-specific GATA3-related tandem super-enhancers (G3SE) that induce high GATA3 in ILC2-committed precursors. G3SE-deficient mice exhibit ILC2 deficiency in the bone marrow, lung, liver, and small intestine with minimal impact on other ILC lineages or Th2 cells. Single-cell RNA-sequencing and subsequent flow cytometry analysis show that GATA3 induction mechanism, which is required for entering the ILC2 stage, is lost in IL-17RB+PD-1- late ILC2-committed precursor stage in G3SE-deficient mice. Cnot6l, part of the CCR4-NOT deadenylase complex, is a possible GATA3 target during ILC2 development. Our findings implicate a stage-specific regulatory mechanism for GATA3 expression during ILC2 development.

MeSH terms

  • Animals
  • Cell Differentiation / immunology
  • Cell Lineage*
  • Enhancer Elements, Genetic / genetics
  • GATA3 Transcription Factor* / genetics
  • GATA3 Transcription Factor* / metabolism
  • Immunity, Innate*
  • Lymphocytes* / cytology
  • Lymphocytes* / immunology
  • Lymphocytes* / metabolism
  • Mice
  • Mice, Inbred C57BL
  • Mice, Knockout
  • Single-Cell Analysis
  • Th2 Cells / immunology

Substances

  • GATA3 Transcription Factor
  • Gata3 protein, mouse