Automation and standardisation of a quantitative multiplex PCR assay using PCR.Ai

J Virol Methods. 2024 Sep:329:114981. doi: 10.1016/j.jviromet.2024.114981. Epub 2024 Jul 14.

Abstract

Background: We previously undertook a prospective clinical study to evaluate PCR.Ai's (www.pcr.ai) accuracy and impact when automating the manual data-analysis and quality control steps associated with routine clinical pathogen testing using a non-quantitative multiplex quantitative real-time PCR (qPCR). In this study we demonstrated 100 % concurrence between our manual routine analysis method and PCR.Ai. This paper expands the evaluation of PCR.Ai's (www.pcr.ai) accuracy and impact using a multiplex quantitative real-time PCR (qPCR).

Objectives: We evaluated the impact of PCR.Ai when used as the final interpretation/verification step for routine in-house multiplex quantitative qPCR tests for CMV, EBV and adenovirus from blood samples for a total of 1350 interpretations.

Study design: We compared PCR.Ai to our existing manual interpretation, to determine accuracy and hands on time savings.

Results and conclusions: There was 100 % concurrence between validated CMV, EBV and adenovirus detection and quantitation by our manual routine analysis method and PCR.Ai. Furthermore, there were significant routine savings with PCR.Ai of 63 minutes/ run. Our conclusion is that for quantitative tests PCR.Ai is a highly accurate time-saving tool that reduces complexity of qPCR analysis and hence the need for specialists and hands-on time. It demonstrated capabilities to enable us to get results out more quickly with lower costs and less risk of errors.

Keywords: Multiplex PCR; PCR:Ai; Quantitation.

MeSH terms

  • Adenoviridae / genetics
  • Adenoviridae / isolation & purification
  • Automation
  • Automation, Laboratory / methods
  • Automation, Laboratory / standards
  • Cytomegalovirus / genetics
  • Cytomegalovirus / isolation & purification
  • Herpesvirus 4, Human / genetics
  • Herpesvirus 4, Human / isolation & purification
  • Humans
  • Multiplex Polymerase Chain Reaction* / methods
  • Multiplex Polymerase Chain Reaction* / standards
  • Prospective Studies
  • Real-Time Polymerase Chain Reaction* / methods
  • Real-Time Polymerase Chain Reaction* / standards