Nup358 restricts ER-mitochondria connectivity by modulating mTORC2/Akt/GSK3β signalling

EMBO Rep. 2024 Oct;25(10):4226-4251. doi: 10.1038/s44319-024-00204-8. Epub 2024 Jul 18.

Abstract

ER-mitochondria contact sites (ERMCSs) regulate processes, including calcium homoeostasis, energy metabolism and autophagy. Previously, it was shown that during growth factor signalling, mTORC2/Akt gets recruited to and stabilizes ERMCSs. Independent studies showed that GSK3β, a well-known Akt substrate, reduces ER-mitochondria connectivity by disrupting the VAPB-PTPIP51 tethering complex. However, the mechanisms that regulate ERMCSs are incompletely understood. Here we find that annulate lamellae (AL), relatively unexplored subdomains of ER enriched with a subset of nucleoporins, are present at ERMCSs. Depletion of Nup358, an AL-resident nucleoporin, results in enhanced mTORC2/Akt activation, GSK3β inhibition and increased ERMCSs. Depletion of Rictor, a mTORC2-specific subunit, or exogenous expression of GSK3β, was sufficient to reverse the ERMCS-phenotype in Nup358-deficient cells. We show that growth factor-mediated activation of mTORC2 requires the VAPB-PTPIP51 complex, whereas, Nup358's association with this tether restricts mTORC2/Akt signalling and ER-mitochondria connectivity. Expression of a Nup358 fragment that is sufficient for interaction with the VAPB-PTPIP51 complex suppresses mTORC2/Akt activation and disrupts ERMCSs. Collectively, our study uncovers a novel role for Nup358 in controlling ERMCSs by modulating the mTORC2/Akt/GSK3β axis.

Keywords: Annulate Lamellae; ER-mitochondria Contact Sites; GSK3β; Nucleoporins; mTORC2.

MeSH terms

  • Endoplasmic Reticulum* / metabolism
  • Glycogen Synthase Kinase 3 / metabolism
  • Glycogen Synthase Kinase 3 beta / genetics
  • Glycogen Synthase Kinase 3 beta / metabolism
  • Humans
  • Mechanistic Target of Rapamycin Complex 2 / genetics
  • Mechanistic Target of Rapamycin Complex 2 / metabolism
  • Mitochondria* / metabolism
  • Molecular Chaperones* / genetics
  • Molecular Chaperones* / metabolism
  • Multiprotein Complexes / metabolism
  • Nuclear Pore Complex Proteins* / genetics
  • Nuclear Pore Complex Proteins* / metabolism
  • Proto-Oncogene Proteins c-akt / metabolism
  • Rapamycin-Insensitive Companion of mTOR Protein / genetics
  • Rapamycin-Insensitive Companion of mTOR Protein / metabolism
  • Signal Transduction*
  • TOR Serine-Threonine Kinases / metabolism

Substances

  • Glycogen Synthase Kinase 3
  • Glycogen Synthase Kinase 3 beta
  • GSK3B protein, human
  • Mechanistic Target of Rapamycin Complex 2
  • Molecular Chaperones
  • Multiprotein Complexes
  • Nuclear Pore Complex Proteins
  • Proto-Oncogene Proteins c-akt
  • Rapamycin-Insensitive Companion of mTOR Protein
  • TOR Serine-Threonine Kinases
  • ran-binding protein 2