The ubiquitin ligase UBR4 and the deubiquitylase USP5 modulate the stability of DNA mismatch repair protein MLH1

J Biol Chem. 2024 Aug;300(8):107592. doi: 10.1016/j.jbc.2024.107592. Epub 2024 Jul 18.

Abstract

MLH1 plays a critical role in DNA mismatch repair and genome maintenance. MLH1 deficiency promotes cancer development and progression, but the mechanism underlying MLH1 regulation remains enigmatic. In this study, we demonstrated that MLH1 protein is degraded by the ubiquitin-proteasome system and have identified vital cis-elements and trans-factors involved in MLH1 turnover. We found that the region encompassing the amino acids 516 to 650 is crucial for MLH1 degradation. The mismatch repair protein PMS2 may shield MLH1 from degradation as it binds to the MLH1 segment key to its turnover. Furthermore, we have identified the E3 ubiquitin ligase UBR4 and the deubiquitylase USP5, which oppositely modulate MLH1 stability. In consistence, UBR4 or USP5 deficiency affects the cellular response to nucleotide analog 6-TG, supporting their roles in regulating mismatch repair. Our study has revealed important insights into the regulatory mechanisms underlying MLH1 proteolysis, critical to DNA mismatch repair related diseases.

Keywords: DNA mismatch repair; E3 ligase; MLH1; deubiquitylase; ubiquitin.

MeSH terms

  • DNA Mismatch Repair*
  • HEK293 Cells
  • Humans
  • Mismatch Repair Endonuclease PMS2 / genetics
  • Mismatch Repair Endonuclease PMS2 / metabolism
  • MutL Protein Homolog 1* / genetics
  • MutL Protein Homolog 1* / metabolism
  • Protein Stability
  • Proteolysis*
  • Ubiquitin-Protein Ligases* / genetics
  • Ubiquitin-Protein Ligases* / metabolism
  • Ubiquitin-Specific Proteases / genetics
  • Ubiquitin-Specific Proteases / metabolism

Substances

  • MutL Protein Homolog 1
  • MLH1 protein, human
  • Ubiquitin-Protein Ligases
  • Mismatch Repair Endonuclease PMS2
  • Ubiquitin-Specific Proteases
  • PMS2 protein, human