An sn-2 regioselective lipase with cis-fatty acid preference from Cordyceps militaris: Biochemical characterization and insights into its regioselective mechanism

Int J Biol Macromol. 2024 Sep;276(Pt 2):134013. doi: 10.1016/j.ijbiomac.2024.134013. Epub 2024 Jul 19.

Abstract

Lipase with unique regioselectivity is an attractive biocatalyst for elaborate lipid modification. However, the excavation of novel sn-2 regioselective lipases is difficult due to their scarcity in nature, with Candida antarctica lipase A (CALA) being the pronouncedly reported one. Here, we identified a novel CALA-like lipase from Cordyceps militaris (CACML7) via in silico mining. Through chiral-phase high-performance liquid chromatography, we determined that CACML7 displays sn-2 regioselectivity (>68 %) as does CALA, but exhibits distinctive chain length selectivity and bias against unsaturated fats. Notably, the curvature of the acyl-binding tunnel was expected to contribute to the 2.2-fold higher preference for cis-fatty acid (C18:1, cis-Δ9) over trans-fatty acid (C18:1, trans-Δ9) unlike trans-active CALA. Random pose docking of trioleoylglycerol (TOG) into the active site of a lid-truncated mutant of CACML7 revealed that TOG accepts a tuning fork conformation, of which the precise positioning of the reactive ester group towards the catalytic center was only favorable via sn-2 binding mode. The unique active site morphology, which we refer to as an "acyl-binding tunnel with a narrow entrance," may contribute to the sn-2 regioselectivity of CACML7. Our data provide an attractive model to better understand the mechanism underlying sn-2 regioselectivity.

Keywords: Acyl-binding tunnel; Candida antarctica lipase a; In silico mining; Structure–function relationship; Unsaturated fats; cis-fatty acid.

MeSH terms

  • Catalytic Domain
  • Cordyceps* / chemistry
  • Cordyceps* / enzymology
  • Cordyceps* / metabolism
  • Fatty Acids* / chemistry
  • Fatty Acids* / metabolism
  • Fungal Proteins / chemistry
  • Fungal Proteins / genetics
  • Fungal Proteins / metabolism
  • Lipase* / chemistry
  • Lipase* / genetics
  • Lipase* / metabolism
  • Molecular Docking Simulation
  • Stereoisomerism
  • Substrate Specificity

Substances

  • Lipase
  • Fatty Acids
  • Fungal Proteins