Phytochemical Profiling and Anti-VanA Activity of Pulegone Extracted from Ziziphora tenuior Flower Against Vancomycin-Resistant Enterococci: An In Silico Approach

Chem Biodivers. 2025 Feb;22(2):e202401536. doi: 10.1002/cbdv.202401536. Epub 2024 Nov 4.

Abstract

Ziziphora tenuior is a herb known for its potent pharmaceutical activities. However, the specific compounds of the flowers of this herb have not been fully studied yet. This study used GC-MS to conduct a chemical analysis of the methanol and dichloromethane extracts of Z. tenuior flowers. Additionally, it sought to assess the potential antibacterial activity of the extracts against vancomycin-resistant enterococci (VRE) bacteria by predicting the interactions between one of the most prevalent compounds in the extracts and the D-alanyl-D-lactate ligase (VanA) protein, which is responsible for enterococci resistant to vancomycin. The results revealed a total of 15 compounds in the methanolic extract and 12 compounds in the dichloromethane extract. Among these, 5-methyl-2-(1-methylethylidene)-cyclohexanone, also known as pulegone, constituting 52.6 % of the methanolic extract and 34.6 % of the dichloromethane extract, was the most abundant compound in the extracts. Furthermore, the in-silico analysis demonstrated that pulegone exhibited significant interactions with VanA, as indicated by docking energy values of -7 kcal/mol and the formation of one hydrogen bond. The study suggests that pulegone shows promise as an antibacterial agent against VRE by potentially interacting with VanA protein and serving as a key inhibitor in fighting vancomycin resistance.

Keywords: Antibacterials; Antibiotic resistance; Herbal medicine; Phytochemistry; Ziziphora tenuior.

MeSH terms

  • Anti-Bacterial Agents* / chemistry
  • Anti-Bacterial Agents* / isolation & purification
  • Anti-Bacterial Agents* / pharmacology
  • Bacterial Proteins / antagonists & inhibitors
  • Bacterial Proteins / metabolism
  • Cyclohexane Monoterpenes / chemistry
  • Cyclohexane Monoterpenes / pharmacology
  • Flowers* / chemistry
  • Microbial Sensitivity Tests*
  • Molecular Docking Simulation*
  • Monoterpenes / chemistry
  • Monoterpenes / isolation & purification
  • Monoterpenes / pharmacology
  • Phytochemicals / chemistry
  • Phytochemicals / isolation & purification
  • Phytochemicals / pharmacology
  • Plant Extracts* / chemistry
  • Plant Extracts* / isolation & purification
  • Plant Extracts* / pharmacology
  • Vancomycin-Resistant Enterococci* / drug effects
  • Zingiberaceae / chemistry

Substances

  • Anti-Bacterial Agents
  • Plant Extracts
  • Phytochemicals
  • Cyclohexane Monoterpenes
  • Bacterial Proteins
  • Monoterpenes