Proteomic study identifies Aurora-A-mediated regulation of alternative splicing through multiple splicing factors

J Biol Chem. 2025 Jan;301(1):108000. doi: 10.1016/j.jbc.2024.108000. Epub 2024 Nov 17.

Abstract

The cell cycle regulator Aurora-A kinase presents an attractive target for cancer therapies, though its inhibition is also associated with toxic side effects. To gain a more nuanced understanding of Aurora-A function, we applied shotgun proteomics to identify 407 specific protein partners, including several splicing factors. Supporting a role in alternative splicing, we found that Aurora-A localizes to nuclear speckles, the storehouse of splicing proteins. Aurora-A interacts with and phosphorylates splicing factors both in vitro and in vivo, suggesting that it regulates alternative splicing by modulating the activity of these splicing factors. Consistently, Aurora-A inhibition significantly impacts the alternative splicing of 505 genes, with RNA motif analysis revealing an enrichment for Aurora-A interacting splicing factors. Additionally, we observed a significant positive correlation between the splicing events regulated by Aurora-A and those modulated by its interacting splicing factors. An interesting example is represented by CLK1 exon 4, which appears to be regulated by Aurora-A through SRSF3. Collectively, our findings highlight a broad role of Aurora-A in the regulation of alternative splicing.

Keywords: Aurora-A; CLK1; RNA; SR protein; cancer; cell cycle; hnRNP proteins; kinase; mitosis; proteomics; splicing.

Publication types

  • Research Support, N.I.H., Intramural

MeSH terms

  • Alternative Splicing*
  • Aurora Kinase A* / genetics
  • Aurora Kinase A* / metabolism
  • Exons
  • HEK293 Cells
  • HeLa Cells
  • Humans
  • Phosphorylation
  • Protein Serine-Threonine Kinases / genetics
  • Protein Serine-Threonine Kinases / metabolism
  • Protein-Tyrosine Kinases / genetics
  • Protein-Tyrosine Kinases / metabolism
  • Proteomics* / methods
  • RNA Splicing Factors* / genetics
  • RNA Splicing Factors* / metabolism
  • Serine-Arginine Splicing Factors / genetics
  • Serine-Arginine Splicing Factors / metabolism

Substances

  • Aurora Kinase A
  • Serine-Arginine Splicing Factors
  • Clk dual-specificity kinases
  • RNA Splicing Factors
  • SRSF3 protein, human
  • Protein-Tyrosine Kinases
  • AURKA protein, human
  • Protein Serine-Threonine Kinases

Associated data

  • GEO/GSE160733
  • GEO/GSE281881