Genome sequences of antimicrobial-resistant Campylobacter coli and Campylobacter jejuni, isolated from poultry in Ukraine

doi:10.1128/mra.00795-24

. 2024 Dec 12;13(12):e0079524.

doi: 10.1128/mra.00795-24. Epub 2024 Nov 21.

Genome sequences of antimicrobial-resistant Campylobacter coli and Campylobacter jejuni, isolated from poultry in Ukraine

Ihor Halka¹, Natalia Shchur^{1

2}, Eric Bortz³, Svitlana Mandyhra⁴, Vitalii Nedosekov², Orest Katsaraba⁵, Ian Goodfellow⁶, Devin M Drown^{7

8}, Ganna Kovalenko^{3

6}

Affiliations

¹ Research Bacteriological Department, State Scientific Research Institute for Laboratory Diagnostics and Veterinary and Sanitary Expertise, Kyiv, Ukraine.
² Faculty of Veterinary Medicine, National University of Life and Environmental Sciences of Ukraine, Kyiv, Ukraine.
³ Department of Biological Sciences, University of Alaska Anchorage, Anchorage, Alaska, USA.
⁴ Research Molecular and Genetical Department, State Scientific Research Institute for Laboratory Diagnostics and Veterinary and Sanitary Expertise, Kyiv, Ukraine.
⁵ Department of Obstetrics, Gynecology and Biotechnology of Animal Reproduction, Stepan Gzhytskyi National University of Veterinary Medicine and Biotechnologies Lviv, Lviv, Ukraine.
⁶ Department of Pathology, University of Cambridge, Cambridge, United Kingdom.
⁷ Department of Biology and Wildlife, University of Alaska Fairbanks, Fairbanks, Alaska, USA.
⁸ Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks, Alaska, USA.

PMID: 39570027
PMCID: PMC11636359
DOI: 10.1128/mra.00795-24

Genome sequences of antimicrobial-resistant Campylobacter coli and Campylobacter jejuni, isolated from poultry in Ukraine

Ihor Halka et al. Microbiol Resour Announc. 2024.

. 2024 Dec 12;13(12):e0079524.

doi: 10.1128/mra.00795-24. Epub 2024 Nov 21.

Authors

Ihor Halka¹, Natalia Shchur^{1

2}, Eric Bortz³, Svitlana Mandyhra⁴, Vitalii Nedosekov², Orest Katsaraba⁵, Ian Goodfellow⁶, Devin M Drown^{7

8}, Ganna Kovalenko^{3

6}

Affiliations

¹ Research Bacteriological Department, State Scientific Research Institute for Laboratory Diagnostics and Veterinary and Sanitary Expertise, Kyiv, Ukraine.
² Faculty of Veterinary Medicine, National University of Life and Environmental Sciences of Ukraine, Kyiv, Ukraine.
³ Department of Biological Sciences, University of Alaska Anchorage, Anchorage, Alaska, USA.
⁴ Research Molecular and Genetical Department, State Scientific Research Institute for Laboratory Diagnostics and Veterinary and Sanitary Expertise, Kyiv, Ukraine.
⁵ Department of Obstetrics, Gynecology and Biotechnology of Animal Reproduction, Stepan Gzhytskyi National University of Veterinary Medicine and Biotechnologies Lviv, Lviv, Ukraine.
⁶ Department of Pathology, University of Cambridge, Cambridge, United Kingdom.
⁷ Department of Biology and Wildlife, University of Alaska Fairbanks, Fairbanks, Alaska, USA.
⁸ Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks, Alaska, USA.

PMID: 39570027
PMCID: PMC11636359
DOI: 10.1128/mra.00795-24

Abstract

Genomes of a Campylobacter coli OR12-like strain ChP2023 (1,713,995 bp) isolated from broiler chicken and Campylobacter jejuni subsp. jejuni NCTC 11168R-like strain KF2023 (1,729,995 bp) isolated from turkey, from poultry production facilities in Ukraine in 2023, were sequenced using Oxford Nanopore Technologies. Both genomes included antibiotic resistance genes and other virulence factors.

Keywords: AMR; Campylobacter coli; Campylobacter jejuni; Ukraine; genome analysis; nanopore sequencing.

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Conflict of interest statement

E.B. has consulted for B&V, Metabiota, and Epidemic Biosciences, LLC, on unrelated projects. The other authors declare no conflict of interest.

References

1. Arefiev V, Kovalenko G, Frant M, Chumachenko T, Polyvianna Y, Pivnenko S, Bolotin V, Mayboroda O, Solodiankin O, Tarasov O, Bezyemenni M, Lyon C, Redlinger M, Sapachova M, Mezhenskyi AA, Ducluzeau A-L, Bortz E, Gerilovych A, Drown DM. 2020. Complete genome sequence of Salmonella enterica subsp. enterica serovar Kottbus strain Kharkiv, isolated from a commercial pork production facility in Ukraine. Microbiol Resour Announc 9:e01171-20. doi:10.1128/MRA.01171-20 - DOI - PMC - PubMed
1. Bolotin V, Kovalenko G, Marchenko N, Solodiankin O, Rudova N, Kutsenko V, Bortz E, Gerilovych A, Drown DM. 2021. Complete genome sequence of Brucella abortus 68, isolated from aborted fetal sheep in Ukraine. Microbiol Resour Announc 10:e01436-20. doi:10.1128/MRA.01436-20 - DOI - PMC - PubMed
1. Tarasov O, Kovalenko G, Muzykina L, Bezymennyi M, Bortz E, Drown DM. 2022. Genome sequence of Erysipelothrix sp. strain poltava, isolated from acute septic erysipelas of swine in Ukraine. Microbiol Resour Announc 11:e0043822. doi:10.1128/mra.00438-22 - DOI - PMC - PubMed
1. Shchur N, Chechet O, Mazur T, Martyniuk O, Gorbatiuk O, Buchkovska H, Musiets I, Ordynska D, Finkova O, Moskalenko L, Ponomaryova-Gerasimyuk T, Lusta M, Nedosekov V. 2023. Prevalence and antimicrobial resistance of campylobacter isolated from animals and poultry in Ukraine. AAVS 11:852–863. doi:10.17582/journal.aavs/2023/11.5.852.863 - DOI
1. ISO . 2017. 10272-1:2006 revised 2017, microbiology of the food chain - horizontal method for detection and enumeration of Campylobacter spp. - part 1: detection method. Available from: https://www.iso.org/standard/63225.html

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[1] Arefiev V, Kovalenko G, Frant M, Chumachenko T, Polyvianna Y, Pivnenko S, Bolotin V, Mayboroda O, Solodiankin O, Tarasov O, Bezyemenni M, Lyon C, Redlinger M, Sapachova M, Mezhenskyi AA, Ducluzeau A-L, Bortz E, Gerilovych A, Drown DM. 2020. Complete genome sequence of Salmonella enterica subsp. enterica serovar Kottbus strain Kharkiv, isolated from a commercial pork production facility in Ukraine. Microbiol Resour Announc 9:e01171-20. doi:10.1128/MRA.01171-20 - DOI - PMC - PubMed

[2] Arefiev V, Kovalenko G, Frant M, Chumachenko T, Polyvianna Y, Pivnenko S, Bolotin V, Mayboroda O, Solodiankin O, Tarasov O, Bezyemenni M, Lyon C, Redlinger M, Sapachova M, Mezhenskyi AA, Ducluzeau A-L, Bortz E, Gerilovych A, Drown DM. 2020. Complete genome sequence of Salmonella enterica subsp. enterica serovar Kottbus strain Kharkiv, isolated from a commercial pork production facility in Ukraine. Microbiol Resour Announc 9:e01171-20. doi:10.1128/MRA.01171-20 - DOI - PMC - PubMed

[3] Bolotin V, Kovalenko G, Marchenko N, Solodiankin O, Rudova N, Kutsenko V, Bortz E, Gerilovych A, Drown DM. 2021. Complete genome sequence of Brucella abortus 68, isolated from aborted fetal sheep in Ukraine. Microbiol Resour Announc 10:e01436-20. doi:10.1128/MRA.01436-20 - DOI - PMC - PubMed

[4] Bolotin V, Kovalenko G, Marchenko N, Solodiankin O, Rudova N, Kutsenko V, Bortz E, Gerilovych A, Drown DM. 2021. Complete genome sequence of Brucella abortus 68, isolated from aborted fetal sheep in Ukraine. Microbiol Resour Announc 10:e01436-20. doi:10.1128/MRA.01436-20 - DOI - PMC - PubMed

[5] Tarasov O, Kovalenko G, Muzykina L, Bezymennyi M, Bortz E, Drown DM. 2022. Genome sequence of Erysipelothrix sp. strain poltava, isolated from acute septic erysipelas of swine in Ukraine. Microbiol Resour Announc 11:e0043822. doi:10.1128/mra.00438-22 - DOI - PMC - PubMed

[6] Tarasov O, Kovalenko G, Muzykina L, Bezymennyi M, Bortz E, Drown DM. 2022. Genome sequence of Erysipelothrix sp. strain poltava, isolated from acute septic erysipelas of swine in Ukraine. Microbiol Resour Announc 11:e0043822. doi:10.1128/mra.00438-22 - DOI - PMC - PubMed

[7] Shchur N, Chechet O, Mazur T, Martyniuk O, Gorbatiuk O, Buchkovska H, Musiets I, Ordynska D, Finkova O, Moskalenko L, Ponomaryova-Gerasimyuk T, Lusta M, Nedosekov V. 2023. Prevalence and antimicrobial resistance of campylobacter isolated from animals and poultry in Ukraine. AAVS 11:852–863. doi:10.17582/journal.aavs/2023/11.5.852.863 - DOI

[8] Shchur N, Chechet O, Mazur T, Martyniuk O, Gorbatiuk O, Buchkovska H, Musiets I, Ordynska D, Finkova O, Moskalenko L, Ponomaryova-Gerasimyuk T, Lusta M, Nedosekov V. 2023. Prevalence and antimicrobial resistance of campylobacter isolated from animals and poultry in Ukraine. AAVS 11:852–863. doi:10.17582/journal.aavs/2023/11.5.852.863 - DOI

[9] ISO . 2017. 10272-1:2006 revised 2017, microbiology of the food chain - horizontal method for detection and enumeration of Campylobacter spp. - part 1: detection method. Available from: https://www.iso.org/standard/63225.html

[10] ISO . 2017. 10272-1:2006 revised 2017, microbiology of the food chain - horizontal method for detection and enumeration of Campylobacter spp. - part 1: detection method. Available from: https://www.iso.org/standard/63225.html

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Genome sequences of antimicrobial-resistant Campylobacter coli and Campylobacter jejuni, isolated from poultry in Ukraine

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Genome sequences of antimicrobial-resistant Campylobacter coli and Campylobacter jejuni, isolated from poultry in Ukraine

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Abstract

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