A strategy to design protein-based antagonists against type I cytokine receptors

PLoS Biol. 2024 Nov 26;22(11):e3002883. doi: 10.1371/journal.pbio.3002883. eCollection 2024 Nov.

Abstract

Excessive cytokine signaling resulting from dysregulation of a cytokine or its receptor can be a main driver of cancer, autoimmune, or hematopoietic disorders. Here, we leverage protein design to create tailored cytokine receptor blockers with idealized properties. Specifically, we aimed to tackle the granulocyte-colony stimulating factor receptor (G-CSFR), a mediator of different types of leukemia and autoinflammatory diseases. By modifying designed G-CSFR binders, we engineered hyper-stable proteins that function as nanomolar signaling antagonists. X-ray crystallography showed atomic-level agreement with the experimental structure of an exemplary design. Furthermore, the most potent design blocks G-CSFR in acute myeloid leukemia cells and primary human hematopoietic stem cells. Thus, the resulting designs can be used for inhibiting or homing to G-CSFR-expressing cells. Our results also demonstrate that similarly designed cytokine mimics can be used to derive antagonists to tackle other type I cytokine receptors.

MeSH terms

  • Crystallography, X-Ray / methods
  • Cytokines / metabolism
  • Drug Design
  • HEK293 Cells
  • Hematopoietic Stem Cells / drug effects
  • Hematopoietic Stem Cells / metabolism
  • Humans
  • Leukemia, Myeloid, Acute / drug therapy
  • Leukemia, Myeloid, Acute / metabolism
  • Protein Binding
  • Protein Engineering / methods
  • Receptors, Granulocyte Colony-Stimulating Factor* / metabolism
  • Signal Transduction / drug effects

Substances

  • Receptors, Granulocyte Colony-Stimulating Factor
  • Cytokines