RAD51 plays critical roles in DNMT1-mediated maintenance methylation of genomic DNA by dually regulating the ubiquitin ligase UHRF1

Proc Natl Acad Sci U S A. 2024 Dec 10;121(50):e2410119121. doi: 10.1073/pnas.2410119121. Epub 2024 Dec 2.

Abstract

RAD51 is related to the bacterial RecA protein and is best known for its role in homologous recombination-mediated repair of DNA damage. Here, we report an unexpected function of RAD51 in the maintenance methylation of genomic DNA, a function that is separable from its role in homologous recombination. First, it acts as an inhibitor of the E3 ubiquitin ligase UHRF1. Deficiency in RAD51 causes excessive ubiquitination and degradation of the DNA methyltransferase DNMT1, leading to the loss of global DNA methylation. Second, RAD51 helps UHRF1 to monoubiquitinate histone H3 to generate DNMT1 recruiting signal. It binds H3 directly, enabling UHRF1 to bind and ubiquitinate H3 more readily. Disrupting the interaction between RAD51 and H3 diminishes DNMT1 recruitment and the failure of maintenance methylation of genomic DNA. Thus, RAD51 dually regulates UHRF1. These results establish RAD51 as a guardian of the integrity of both the genome and the epigenome.

Keywords: DNA methylation; DNMT1; RAD51; UHRF1; epigenetics.

MeSH terms

  • Animals
  • CCAAT-Enhancer-Binding Proteins* / genetics
  • CCAAT-Enhancer-Binding Proteins* / metabolism
  • DNA (Cytosine-5-)-Methyltransferase 1* / genetics
  • DNA (Cytosine-5-)-Methyltransferase 1* / metabolism
  • DNA (Cytosine-5-)-Methyltransferases / genetics
  • DNA (Cytosine-5-)-Methyltransferases / metabolism
  • DNA Methylation*
  • Histones / genetics
  • Histones / metabolism
  • Humans
  • Mice
  • Rad51 Recombinase* / genetics
  • Rad51 Recombinase* / metabolism
  • Ubiquitin-Protein Ligases* / genetics
  • Ubiquitin-Protein Ligases* / metabolism
  • Ubiquitination

Substances

  • Ubiquitin-Protein Ligases
  • Rad51 Recombinase
  • CCAAT-Enhancer-Binding Proteins
  • DNA (Cytosine-5-)-Methyltransferase 1
  • UHRF1 protein, human
  • DNMT1 protein, human
  • Histones
  • RAD51 protein, human
  • Uhrf1 protein, mouse
  • Dnmt1 protein, mouse
  • DNA (Cytosine-5-)-Methyltransferases