Dynamic O-GlcNAcylation governs long-range chromatin interactions in V(D)J recombination during early B-cell development

Cell Mol Immunol. 2025 Jan;22(1):68-82. doi: 10.1038/s41423-024-01236-9. Epub 2024 Dec 3.

Abstract

V(D)J recombination secures the production of functional immunoglobulin (Ig) genes and antibody diversity during the early stages of B-cell development through long-distance interactions mediated by cis-regulatory elements and trans-acting factors. O-GlcNAcylation is a dynamic and reversible posttranslational modification of nuclear and cytoplasmic proteins that regulates various protein functions, including DNA-binding affinity and protein-protein interactions. However, the effects of O-GlcNAcylation on proteins involved in V(D)J recombination remain largely unknown. To elucidate this relationship, we downregulated O-GlcNAcylation in a mouse model by administering an O-GlcNAc inhibitor or restricting the consumption of a regular diet. Interestingly, the inhibition of O-GlcNAcylation in mice severely impaired Ig heavy-chain (IgH) gene rearrangement. We identified several factors crucial for V(D)J recombination, including YY1, CTCF, SMC1, and SMC3, as direct targets of O-GlcNAc modification. Importantly, O-GlcNAcylation regulates the physical interaction between SMC1 and SMC3 and the DNA-binding patterns of YY1 at the IgH gene locus. Moreover, O-GlcNAc inhibition downregulated DDX5 protein expression, affecting the functional association of CTCF with its DNA-binding sites at the IgH locus. Our results showed that locus contraction and long-range interactions throughout the IgH locus are disrupted in a manner dependent on the cellular O-GlcNAc level. In this study, we established that V(D)J recombination relies on the O-GlcNAc status of stage-specific proteins during early B-cell development and identified O-GlcNAc-dependent mechanisms as new regulatory components for the development of a diverse antibody repertoire.

Keywords: Cohesin complex; DDX5; O-GlcNAcylation; V(D)J recombination; YY1 and CTCF DNA binding.

MeSH terms

  • Acetylglucosamine / metabolism
  • Animals
  • B-Lymphocytes* / immunology
  • B-Lymphocytes* / metabolism
  • CCCTC-Binding Factor
  • Cell Cycle Proteins / genetics
  • Cell Cycle Proteins / metabolism
  • Cell Differentiation
  • Chromatin* / metabolism
  • Chromosomal Proteins, Non-Histone / genetics
  • Chromosomal Proteins, Non-Histone / metabolism
  • Immunoglobulin Heavy Chains / genetics
  • Immunoglobulin Heavy Chains / metabolism
  • Mice
  • Mice, Inbred C57BL
  • Protein Binding
  • Protein Processing, Post-Translational
  • Repressor Proteins / genetics
  • Repressor Proteins / metabolism
  • V(D)J Recombination*
  • YY1 Transcription Factor* / genetics
  • YY1 Transcription Factor* / metabolism

Substances

  • Chromatin
  • YY1 Transcription Factor
  • Acetylglucosamine
  • Immunoglobulin Heavy Chains
  • Yy1 protein, mouse
  • Ctcf protein, mouse
  • Repressor Proteins
  • Cell Cycle Proteins
  • Chromosomal Proteins, Non-Histone
  • CCCTC-Binding Factor