The structural biology of deoxyhypusination complexes

Structure. 2025 Feb 6;33(2):221-227. doi: 10.1016/j.str.2024.12.011. Epub 2025 Jan 13.

Abstract

Deoxyhypusination is the first rate-limiting step of the unique post-translational modification-hypusination-that is catalyzed by deoxyhypusine synthase (DHS) and deoxyhypusine hydroxylase (DOHH). This modification is essential for the activation of translation factor 5A in eukaryotes (eIF5A) and Archaea (aIF5A). This perspective focuses on the structural biology of deoxyhypusination complexes in eukaryotic and archaeal organisms. Based on recently published crystal and cryogenic electron microscopy (cryo-EM) structures of deoxyhypusination complexes from three different organisms, we compare the structural features and stoichiometries of DHS-IF5A complexes across different species. We discuss conserved elements in the active site architecture and binding interfaces as well as significant differences in their stoichiometry and regulation mechanisms. The structural insights provide a comprehensive understanding of the deoxyhypusination process and highlight evolutionary adaptations across the domains of life. Future research should focus on the regulatory mechanisms governing DHS activity and the functional implications of stoichiometric variations in different organisms.

Keywords: PTM; aIF5A; deoxyhypusination; deoxyhypusine synthase; eIF5A; hypusination; hypusine; translation.

Publication types

  • Review

MeSH terms

  • Archaea / metabolism
  • Archaeal Proteins* / chemistry
  • Archaeal Proteins* / metabolism
  • Catalytic Domain
  • Cryoelectron Microscopy
  • Eukaryotic Translation Initiation Factor 5A
  • Humans
  • Lysine* / analogs & derivatives
  • Lysine* / chemistry
  • Lysine* / metabolism
  • Mixed Function Oxygenases* / chemistry
  • Mixed Function Oxygenases* / metabolism
  • Models, Molecular
  • Oxidoreductases Acting on CH-NH Group Donors
  • Peptide Initiation Factors* / chemistry
  • Peptide Initiation Factors* / metabolism
  • Protein Binding
  • Protein Processing, Post-Translational
  • RNA-Binding Proteins* / chemistry
  • RNA-Binding Proteins* / metabolism

Substances

  • Peptide Initiation Factors
  • deoxyhypusine synthase
  • Archaeal Proteins
  • Lysine
  • RNA-Binding Proteins
  • Mixed Function Oxygenases
  • Eukaryotic Translation Initiation Factor 5A
  • hypusine
  • Oxidoreductases Acting on CH-NH Group Donors