The transcriptional response of cortical neurons to concussion reveals divergent fates after injury

Nat Commun. 2025 Jan 27;16(1):1097. doi: 10.1038/s41467-025-56292-0.

Abstract

Traumatic brain injury (TBI) is a risk factor for neurodegeneration, however little is known about how this kind of injury alters neuron subtypes. In this study, we follow neuronal populations over time after a single mild TBI (mTBI) to assess long ranging consequences of injury at the level of single, transcriptionally defined neuronal classes. We find that the stress-responsive Activating Transcription Factor 3 (ATF3) defines a population of cortical neurons after mTBI. Using an inducible reporter linked to ATF3, we genetically mark these damaged cells to track them over time. We find that a population in layer V undergoes cell death acutely after injury, while another in layer II/III survives long term and remains electrically active. To investigate the mechanism controlling layer V neuron death, we genetically silenced candidate stress response pathways. We found that the axon injury responsive dual leucine zipper kinase (DLK) is required for the layer V neuron death. This work provides a rationale for targeting the DLK signaling pathway as a therapeutic intervention for traumatic brain injury. Beyond this, our approach to track neurons after a mild, subclinical injury can inform our understanding of neuronal susceptibility to repeated impacts.

MeSH terms

  • Activating Transcription Factor 3 / genetics
  • Activating Transcription Factor 3 / metabolism
  • Animals
  • Brain Concussion* / genetics
  • Brain Concussion* / metabolism
  • Brain Concussion* / pathology
  • Brain Injuries, Traumatic / metabolism
  • Brain Injuries, Traumatic / pathology
  • Cell Death / genetics
  • Cerebral Cortex* / metabolism
  • Cerebral Cortex* / pathology
  • MAP Kinase Kinase Kinases / genetics
  • MAP Kinase Kinase Kinases / metabolism
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Neurons* / metabolism
  • Neurons* / pathology
  • Signal Transduction
  • Transcription, Genetic

Substances

  • Activating Transcription Factor 3
  • MAP Kinase Kinase Kinases
  • mitogen-activated protein kinase kinase kinase 12
  • Atf3 protein, mouse