A potent epigenetic editor targeting human PCSK9 for durable reduction of low-density lipoprotein cholesterol levels

Nat Med. 2025 Apr;31(4):1329-1338. doi: 10.1038/s41591-025-03508-x. Epub 2025 Feb 10.

Abstract

Epigenetic editing holds the promise of durable therapeutic effects by silencing disease-causing genes without changing the underlying DNA sequence. In this study, we designed an epigenetic editor to target human PCSK9 and thereby induce DNA methylation at this locus. A single administration of lipid nanoparticles encapsulating mRNA encoding this epigenetic editor was sufficient to drive near-complete silencing of human PCSK9 in transgenic mice. Silencing was durable for at least 1 year and was fully maintained after partial hepatectomy-induced liver regeneration. In addition, we showed reversibility of epigenetic editing in mice with previously silenced PCSK9 upon treatment with a targeted epigenetic activator designed to demethylate the PCSK9 locus. Notably, in cynomolgus monkeys, a single administration of the epigenetic editor potently and durably decreased circulating PCSK9 protein levels by approximately 90% with concomitant reduction in low-density lipoprotein cholesterol levels by approximately 70%. These findings demonstrate the therapeutic potential of durable and reversible epigenetic editing in vivo and support the development of epigenetic editor-based treatment for hypercholesterolemia.

MeSH terms

  • Animals
  • Cholesterol, LDL* / blood
  • Cholesterol, LDL* / genetics
  • DNA Methylation / genetics
  • Epigenesis, Genetic* / genetics
  • Gene Editing* / methods
  • Gene Silencing
  • Humans
  • Hypercholesterolemia* / genetics
  • Hypercholesterolemia* / therapy
  • Liver Regeneration / genetics
  • Macaca fascicularis
  • Male
  • Mice
  • Mice, Transgenic
  • Nanoparticles / administration & dosage
  • Proprotein Convertase 9* / genetics
  • RNA, Messenger / genetics

Substances

  • Proprotein Convertase 9
  • Cholesterol, LDL
  • PCSK9 protein, human
  • RNA, Messenger