Transcriptomic Analysis Uncovers an Unfolded Protein Response in ADNP Syndrome

Mol Cell Biol. 2025;45(4):143-153. doi: 10.1080/10985549.2025.2463892. Epub 2025 Feb 14.

Abstract

Chromatin regulators are frequently mutated in autism spectrum disorders, but in most cases how they cause disease is unclear. Mutations in the activity dependent neuroprotective protein (ADNP) causes ADNP syndrome, which is characterized by intellectual deficiency and developmental delays. To identify mechanisms that contribute to ADNP syndrome, we used induced pluripotent stem cells derived from ADNP syndrome patients as a model to test the effects of syndromic ADNP mutations on gene expression and neurodifferentiation. We found that some ADNP mutations result in truncated ADNP proteins, which displayed aberrant subcellular localization. Gene expression analyses revealed widespread transcriptional deregulation in all tested mutants. Interestingly, mutants that show presence of ADNP fragments show ER stress as evidenced by activation of the unfolded protein response (UPR). The mutants showing the greatest UPR pathway activation associated with the most severe neurodifferentiation and survival defects. Our results reveal the potential to explore UPR activation as a new biomarker for ADNP syndrome severity and perhaps also in other ASDs where mutations result in presence of truncated proteins.

Keywords: ADNP syndrome; neurodifferentiation; patient-derived induced pluripotent stem cells; transcriptomics; unfolded protein response.

MeSH terms

  • Autism Spectrum Disorder* / genetics
  • Autism Spectrum Disorder* / metabolism
  • Cell Differentiation
  • Endoplasmic Reticulum Stress / genetics
  • Gene Expression Profiling
  • Homeodomain Proteins
  • Humans
  • Induced Pluripotent Stem Cells / metabolism
  • Intellectual Disability / genetics
  • Mutation
  • Nerve Tissue Proteins* / genetics
  • Nerve Tissue Proteins* / metabolism
  • Transcriptome
  • Unfolded Protein Response* / genetics

Substances

  • ADNP protein, human
  • Nerve Tissue Proteins
  • Homeodomain Proteins