Bi-allelic variants in MRPL49 cause variable clinical presentations, including sensorineural hearing loss, leukodystrophy, and ovarian insufficiency

Am J Hum Genet. 2025 Apr 3;112(4):952-962. doi: 10.1016/j.ajhg.2025.02.005. Epub 2025 Mar 4.

Abstract

Combined oxidative phosphorylation deficiency (COXPD) is a rare multisystem disorder that is clinically and genetically heterogeneous. Genome sequencing identified bi-allelic MRPL49 variants in individuals from nine unrelated families with presentations ranging from Perrault syndrome (primary ovarian insufficiency and sensorineural hearing loss) to severe childhood onset of leukodystrophy, learning disability, microcephaly, and retinal dystrophy. Complexome profiling of fibroblasts from affected individuals revealed reduced levels of the small mitochondrial ribosomal subunits and a more pronounced reduction of the large mitochondrial ribosomal subunits. There was no evidence of altered mitoribosomal assembly. The reductions in levels of oxidative phosphorylation (OXPHOS) enzyme complexes I and IV are consistent with a form of COXPD associated with bi-allelic MRPL49 variants, expanding the understanding of how disruption of the mitochondrial ribosomal large subunit results in multisystem phenotypes.

Keywords: MRPL49; Perrault syndrome; combined oxidative phosphorylation deficiency; learning disability; leukodystrophy; mitochondria; mitoribosome; primary ovarian insufficiency; rare disease; sensorineural hearing loss.

MeSH terms

  • Adolescent
  • Adult
  • Alleles
  • Child
  • Child, Preschool
  • Female
  • Gonadal Dysgenesis, 46,XX* / genetics
  • Hearing Loss, Sensorineural* / genetics
  • Hearing Loss, Sensorineural* / pathology
  • Humans
  • Infant
  • Male
  • Mitochondrial Proteins* / genetics
  • Mutation
  • Oxidative Phosphorylation
  • Pedigree
  • Phenotype
  • Primary Ovarian Insufficiency* / genetics
  • Primary Ovarian Insufficiency* / pathology
  • Ribosomal Proteins* / genetics

Substances

  • Ribosomal Proteins
  • Mitochondrial Proteins

Supplementary concepts

  • Gonadal dysgenesis XX type deafness