The novel SERPINC1 missense mutation c.1148 T > A (p.L383H) causes hereditary antithrombin deficiency and thromboembolism in a Chinese family: a case report

J Med Case Rep. 2025 Mar 6;19(1):102. doi: 10.1186/s13256-025-05114-4.

Abstract

Background: Hereditary antithrombin deficiency, an autosomal-dominant thrombotic disease caused by a SERPINC1 gene deficiency, is extremely rare, although it is the leading cause of hereditary thrombophilias. Herein we report a novel SERPINC1 gene mutation in a Chinese family and one case of pulmonary embolism associated with the mutation. We also discuss the latest diagnostic and treatment strategies for antithrombin deficiency.

Case presentation: The 33-year-old Chinese male proband had a pulmonary embolism and there was no evidence of thromboembolism in the other family members. In the pulmonary embolism case, treatment with nadroparin calcium combined with warfarin failed; however, rivaroxaban was effective. No emboli were evident in the follow-up computed tomography pulmonary angiography. Antithrombin activity fluctuated approximately 50% during hospitalization and follow-up. The antithrombin activity of the proband, his 58-year-old father, and his 5-year-old son was significantly low (44-48%). A novel missense variant c.1148 T > A (p.L383H) in the SERPINC1 gene was identified in these three family members. The pathogenesis predictions from Mutation-Taster, Provean, and SIFT were "disease-causing," "deleterious," and "damaging," respectively.

Conclusion: The novel c.1148 T > A (p.L383H) pathogenic mutation in the SERPINC1 gene updated the gene mutation spectrum of hereditary antithrombin deficiency. Direct oral anticoagulation with rivaroxaban may be a more effective and selective anticoagulant in patients with hereditary antithrombin deficiency over warfarin or heparin.

Keywords: SERPINC1; Hereditary antithrombin deficiency; Novel genetic variant; Pulmonary embolism; Rivaroxaban.

Publication types

  • Case Reports

MeSH terms

  • Adult
  • Anticoagulants / therapeutic use
  • Antithrombin III Deficiency* / complications
  • Antithrombin III Deficiency* / drug therapy
  • Antithrombin III Deficiency* / genetics
  • Antithrombin III* / genetics
  • China
  • East Asian People
  • Humans
  • Male
  • Middle Aged
  • Mutation, Missense
  • Pedigree
  • Pulmonary Embolism* / diagnostic imaging
  • Pulmonary Embolism* / drug therapy
  • Pulmonary Embolism* / genetics
  • Rivaroxaban / therapeutic use

Substances

  • Anticoagulants
  • Antithrombin III
  • Rivaroxaban
  • SERPINC1 protein, human

Supplementary concepts

  • Chinese people