SNX10 functions as a modulator of piecemeal mitophagy and mitochondrial bioenergetics

J Cell Biol. 2025 May 5;224(5):e202404009. doi: 10.1083/jcb.202404009. Epub 2025 Mar 7.

Abstract

We here identify the endosomal protein SNX10 as a negative regulator of piecemeal mitophagy of OXPHOS machinery components. In control conditions, SNX10 localizes to early endocytic compartments in a PtdIns3P-dependent manner and modulates endosomal trafficking but also shows dynamic connections with mitochondria. Upon hypoxia-mimicking conditions, SNX10 localizes to late endosomal structures containing selected mitochondrial proteins, including COX-IV and SAMM50, and the autophagy proteins SQSTM1/p62 and LC3B. The turnover of COX-IV was enhanced in SNX10-depleted cells, with a corresponding reduced mitochondrial respiration and citrate synthase activity. Importantly, zebrafish larvae lacking Snx10 show reduced levels of Cox-IV, as well as elevated ROS levels and ROS-mediated cell death in the brain, demonstrating the in vivo relevance of SNX10-mediated modulation of mitochondrial bioenergetics.

MeSH terms

  • Animals
  • Endosomes / metabolism
  • Energy Metabolism*
  • HeLa Cells
  • Humans
  • Mitochondria* / metabolism
  • Mitophagy*
  • Oxidative Phosphorylation
  • Reactive Oxygen Species / metabolism
  • Sorting Nexins* / genetics
  • Sorting Nexins* / metabolism
  • Zebrafish / metabolism
  • Zebrafish Proteins* / genetics
  • Zebrafish Proteins* / metabolism

Substances

  • Sorting Nexins
  • SNX10 protein, human
  • Zebrafish Proteins
  • Reactive Oxygen Species