A functional single-cell metabolic survey identifies Elovl1 as a target to enhance CD8+ T cell fitness in solid tumours

Nat Metab. 2025 Mar;7(3):508-530. doi: 10.1038/s42255-025-01233-w. Epub 2025 Mar 10.

Abstract

Reprogramming T cell metabolism can improve intratumoural fitness. By performing a CRISPR/Cas9 metabolic survey in CD8+ T cells, we identified 83 targets and we applied single-cell RNA sequencing to disclose transcriptome changes associated with each metabolic perturbation in the context of pancreatic cancer. This revealed elongation of very long-chain fatty acids protein 1 (Elovl1) as a metabolic target to sustain effector functions and memory phenotypes in CD8+ T cells. Accordingly, Elovl1 inactivation in adoptively transferred T cells combined with anti-PD-1 showed therapeutic efficacy in resistant pancreatic and melanoma tumours. The accumulation of saturated long-chain fatty acids in Elovl1-deficient T cells destabilized INSIG1, leading to SREBP2 activation, increased plasma membrane cholesterol and stronger T cell receptor signalling. Elovl1-deficient T cells increased mitochondrial fitness and fatty acid oxidation, thus withstanding the metabolic stress imposed by the tumour microenvironment. Finally, ELOVL1 in CD8+ T cells correlated with anti-PD-1 response in patients with melanoma. Altogether, Elovl1 targeting synergizes with anti-PD-1 to promote effective T cell responses.

MeSH terms

  • Animals
  • CD8-Positive T-Lymphocytes* / immunology
  • CD8-Positive T-Lymphocytes* / metabolism
  • Fatty Acid Elongases* / genetics
  • Fatty Acid Elongases* / metabolism
  • Fatty Acids / metabolism
  • Humans
  • Melanoma / immunology
  • Melanoma / metabolism
  • Mice
  • Neoplasms* / immunology
  • Neoplasms* / metabolism
  • Pancreatic Neoplasms / immunology
  • Pancreatic Neoplasms / metabolism
  • Single-Cell Analysis
  • Tumor Microenvironment

Substances

  • Fatty Acid Elongases
  • Fatty Acids