Molecular mechanism of bacteriophage contraction structure of an S-layer-penetrating bacteriophage

Life Sci Alliance. 2025 Mar 26;8(6):e202403088. doi: 10.26508/lsa.202403088. Print 2025 Jun.

Abstract

The molecular details of phage tail contraction and bacterial cell envelope penetration remain poorly understood and are completely unknown for phages infecting bacteria enveloped by proteinaceous S-layers. Here, we reveal the extended and contracted atomic structures of an intact contractile-tailed phage (φCD508) that binds to and penetrates the protective S-layer of the Gram-positive human pathogen Clostridioides difficile The tail is unusually long (225 nm), and it is also notable that the tail contracts less than those studied in related contractile injection systems such as the model phage T4 (∼20% compared with ∼50%). Surprisingly, we find no evidence of auxiliary enzymatic domains that other phages exploit in cell wall penetration, suggesting that sufficient energy is released upon tail contraction to penetrate the S-layer and the thick cell wall without enzymatic activity. Instead, the unusually long tail length, which becomes more flexible upon contraction, likely contributes toward the required free energy release for envelope penetration.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteriophage T4
  • Bacteriophages* / metabolism
  • Bacteriophages* / physiology
  • Bacteriophages* / ultrastructure
  • Cell Wall / metabolism
  • Cell Wall / virology
  • Clostridioides difficile / virology
  • Models, Molecular
  • Viral Tail Proteins / metabolism

Substances

  • Viral Tail Proteins

Associated data

  • PDB/EMD-51191, PDB 9GAY
  • PDB/EMD-51193, PDB 9GB0
  • PDB/EMD-51196, PDB 9GB3
  • PDB/EMD-51200, PDB 9GB7
  • PDB/EMD-51194, PDB 9GB1
  • PDB/EMD-51195, PDB 9GB2
  • PDB/EMD-51138, PDB 9G8S
  • PDB/EMD-51192, PDB 9GAZ
  • PDB/EMD-51197, PDB 9GB4
  • PDB/EMD-51198, PDB 9GB5
  • PDB/EMD-51199, PDB 9GB6