Dual genetic tracing demonstrates the heterogeneous differentiation and function of neuromesodermal progenitors in vivo

Proc Natl Acad Sci U S A. 2025 Apr 8;122(14):e2402305122. doi: 10.1073/pnas.2402305122. Epub 2025 Apr 3.

Abstract

In recent decades, the traditional paradigm of three distinct germ layers formed during gastrulation has been revised with the identification of neuromesodermal progenitors (NMPs). These progenitors emerge during gastrulation and contribute to both the neural ectoderm, particularly the spinal cord, and the adjacent paraxial mesoderm [D. Henrique et al., Development 142, 2864-2875 (2015); R. J. Garriock et al., Development 142, 1628-1638 (2015); E. Tzouanacou et al., Dev. Cell 17, 365-376 (2009)]. However, effective genetic tools for lineage tracing and functional assessments of NMPs in vivo are currently lacking. Here, we developed a dual recombinase-mediated genetic system to specifically trace and ablate Brachyury+Sox2+ NMPs. Our genetic tracing and single-cell RNA sequencing analyses revealed that NMPs consist of three distinct unipotent and bipotent progenitor populations that progressively differentiate into neural and mesodermal fates. Genetic depletion of NMPs demonstrated their critical role in trunk and tail formation. This study provides in vivo genetic evidence supporting the heterogeneity of NMPs in terms of cell fate determination and their functional roles in the developing embryo.

Keywords: Sox2; bi-potent progenitors; brachyury; dual genetic lineage tracing; neuromesodermal progenitors.

MeSH terms

  • Animals
  • Brachyury Protein
  • Cell Differentiation*
  • Cell Lineage
  • Fetal Proteins / genetics
  • Fetal Proteins / metabolism
  • Mesoderm* / cytology
  • Mesoderm* / metabolism
  • Mice
  • Neural Stem Cells* / cytology
  • Neural Stem Cells* / metabolism
  • SOXB1 Transcription Factors / genetics
  • SOXB1 Transcription Factors / metabolism
  • Single-Cell Analysis
  • T-Box Domain Proteins / genetics
  • T-Box Domain Proteins / metabolism

Substances

  • T-Box Domain Proteins
  • Brachyury Protein
  • Fetal Proteins
  • SOXB1 Transcription Factors