Single-cell spatial transcriptome atlas and whole-brain connectivity of the macaque claustrum

Cell. 2025 Jul 10;188(14):3863-3881.e25. doi: 10.1016/j.cell.2025.02.037. Epub 2025 Apr 3.

Abstract

Claustrum orchestrates brain functions via its connections with numerous brain regions, but its molecular and cellular organization remains unresolved. Single-nucleus RNA sequencing of 227,750 macaque claustral cells identified 48 transcriptome-defined cell types, with most glutamatergic neurons similar to deep-layer insular neurons. Comparison of macaque, marmoset, and mouse transcriptomes revealed macaque-specific cell types. Retrograde tracer injections at 67 cortical and 7 subcortical regions defined four distinct distribution zones of retrogradely labeled claustral neurons. Joint analysis of whole-brain connectivity and single-cell spatial transcriptome showed that these four zones containing distinct compositions of glutamatergic (but not GABAergic) cell types preferentially connected to specific brain regions with a strong ipsilateral bias. Several macaque-specific glutamatergic cell types in ventral vs. dorsal claustral zones selectively co-projected to two functionally related areas-entorhinal cortex and hippocampus vs. motor cortex and putamen, respectively. These data provide the basis for elucidating the neuronal organization underlying diverse claustral functions.

Keywords: cell type; claustrum; connectome; insula; monkey; non-human primates; spatial transcriptome; tract tracing.

MeSH terms

  • Animals
  • Basal Ganglia / metabolism
  • Brain* / metabolism
  • Callithrix
  • Claustrum* / cytology
  • Claustrum* / metabolism
  • Claustrum* / physiology
  • Female
  • Macaca
  • Male
  • Mice
  • Neural Pathways
  • Neurons / metabolism
  • Single-Cell Analysis
  • Transcriptome* / genetics