Mapping genetic diversity with the GenomeIndia project

Chandrika Bhattacharyya; Krithika Subramanian; Bharathram Uppili; Nidhan K Biswas; Shweta Ramdas; Karthik Bharadwaj Tallapaka; Prathima Arvind; Khader Valli Rupanagudi; Arindam Maitra; Tulasi Nagabandi; Tiyasha De; Kuldeep Singh; Praveen Sharma; Nanaocha Sharma; Sunil K Raghav; Punit Prasad; E V Soniya; Abdul Jaleel; Shijulal Nelson Sathi; Madhvi Joshi; Chaitanya Joshi; Mayurika Lahiri; Santosh Dixit; L S Shashidhara; Nachimuthu Senthil Kumar; H Lalhruaitluanga; Lal Nundanga; Venkataram Shivakumar; Ganesan Venkatasubramanian; Naren P Rao; Mohd Ashraf Ganie; Imtiyaz Ahmad Wani; Ganganath Jha; Ashwin Dalal; Murali Dharan Bashyam; Pritish Kumar Varadwaj; Sanjeev Bs; Yogesh Simmhan; Chirag Jain; Durai Sundar; Ishaan Gupta; Pankaj Yadav; Himanshu Sinha; Manikandan Narayanan; Karthik Raman; Raghu Padinjat; Radhakrishnan Sabarinathan; GenomeIndia Consortium; Yadati Narahari; Vijayalakshmi Ravindranath; Kumarasamy Thangaraj; Divya Tej Sowpati; Mohammed Faruq; Analabha Basu; Bratati Kahali

doi:10.1038/s41588-025-02153-x

Mapping genetic diversity with the GenomeIndia project

Nat Genet. 2025 Apr;57(4):767-773. doi: 10.1038/s41588-025-02153-x.

Authors

Chandrika Bhattacharyya^#¹, Krithika Subramanian^#^{2

3}, Bharathram Uppili⁴, Nidhan K Biswas¹, Shweta Ramdas², Karthik Bharadwaj Tallapaka⁵, Prathima Arvind², Khader Valli Rupanagudi², Arindam Maitra¹, Tulasi Nagabandi⁵, Tiyasha De⁴, Kuldeep Singh⁶, Praveen Sharma⁶, Nanaocha Sharma⁷, Sunil K Raghav⁸, Punit Prasad⁸, E V Soniya⁹, Abdul Jaleel⁹, Shijulal Nelson Sathi⁹, Madhvi Joshi¹⁰, Chaitanya Joshi¹⁰, Mayurika Lahiri¹¹, Santosh Dixit¹¹, L S Shashidhara¹¹, Nachimuthu Senthil Kumar¹², H Lalhruaitluanga¹², Lal Nundanga¹², Venkataram Shivakumar¹³, Ganesan Venkatasubramanian¹³, Naren P Rao¹³, Mohd Ashraf Ganie¹⁴, Imtiyaz Ahmad Wani¹⁴, Ganganath Jha¹⁵, Ashwin Dalal¹⁶, Murali Dharan Bashyam¹⁶, Pritish Kumar Varadwaj¹⁷, Sanjeev Bs¹⁷, Yogesh Simmhan¹⁸, Chirag Jain¹⁸, Durai Sundar¹⁹, Ishaan Gupta¹⁹, Pankaj Yadav²⁰, Himanshu Sinha²¹, Manikandan Narayanan²¹, Karthik Raman²¹, Raghu Padinjat²², Radhakrishnan Sabarinathan²²; GenomeIndia Consortium; Yadati Narahari^{2

18}, Vijayalakshmi Ravindranath², Kumarasamy Thangaraj²³, Divya Tej Sowpati²⁴, Mohammed Faruq²⁵, Analabha Basu²⁶, Bratati Kahali²⁷

Collaborators

GenomeIndia Consortium:
Kumarasamy Thangaraj, Mitali Mukerji, Sridhar Sivasubbu, Vinod Scaria, Suman K Paine, Karthik Bharadwaj Tallapaka, Govindarajan Umapathy, Vinay K Nandicoori, Rakesh Mishra, Dinabandhu Sahoo, Ajay Parida, M Radhakrishna Pillai, Abitha Thomas, L S Shashidhara, Nachimuthu Senthil Kumar, Arun Kumar, B Jayaram, Padinjat Raghu, Azad Ali, Mahabub Alam, Parveena Choudhury, Poulomi Ghosh, Sukanya Dhar, Saurav Roy, Nasrin Parvin, Rahul Modak, Sayan Bhowmick, Sourav Gangopadhyay, Devashish Tripathi, K S H Shafeeq, G Rajesh, C Mohana, A Divakar, Reddy P Kommaddi, Neha Singh, Priya Pandey, Devavrat Desai, Mahfuj Hassan, Deepak Kumar Kashyap, Vasantha Kumar, Aman Kumar Suryan, Hema Sindhuja Rachiraju, A Mahesh, Sushmita Nitta, Vijaya Mohan, Karthikeyan Meenakshisundaram, Jagamohan Chhatai, G Mala, Sandeep Kumar Pal, Simmy Kaur, Mahino Fatima, Mohammed Akbar, Rahul C Bhoyar, Pooja Sharma, Shreya Bari, Pratima Pandey, Anushree Mishra, Nishat Ashrafi, Syed Ahmad, Deepak Mudila, Arun Sree Parameswaran, Dolat Singh Shekhawat, Nayan Tada, Tanuja Rajial, Varuna Vyas, Arvinda Thoudam, H Moushmi Sharma, Khuraijam Dolly Devi, Teresa Tangpua, Adyasha Mishra, Arup Ghosh, Deepak Jena, Soumendu Mahapatra, Sudarshana Jena, Sudeshna Datta, Shijulal Nelson Sathi, Abhitha Thomas, Udaya Lekshmi, R A Aswanth, Anjana S Nair, Vasudev Paveri, T S Amal, Aman Tripathi, Bhagirath Dave, Bhumika Prajapati, Ramesh Pandit, Sanman Samova, Ajay Malik, Kajal Gaikwad, Siddharth Gahlaut, Andrew Vanlallawma, John Zohmingthanga, Lalawmpuii Pachuau, Lalchhandama Chhakchhuak, Ranjan Jyoti Sarma, Daddaladka Krishnayya Samartha, Paranthaman V Kavya, S G Tejaswini, Bashir Ahmad Charoo, Mahrukh Hameed Zargar, K H Rakesh, Shobha Anilkumar, Saurav Roy, Shouvanik Sengupta, Indranil Bagchi, Subrata Patra, M H K Mujawar, Vinayak Hosawad, Valli Undamatla, Pratheusa Machha, Shahrumi Reza, Divya Goel, Bharathram Uppilli, Arushi Batra, Ashvarya Shankar, Gayatri Singh, Suman Mudila, Saima Iram, Mohamed Imran, Mohit Divakar, Vigneshwar Senthivel, Vinay More, Arghya Dey, Haya Afreen, Animesh Kumar Singh, Arnab Ghosh, Chitrarpita Das, Debashree Tagore, Subrata Das, Krithika Subramanian, Shreya Chakraborty, Raghvendra Agrawal, Sauma Suvra Majumdar, Siddhi Jani, Akkshaya Rajesh, Debasrija Mondal, Anand Kumar, Debdutta Chatterjee, Priyanka Singh, A Sohan Angelo, Tanmay Panigrahi, Eric Macwan, Rupanwita Majumder, S Sagar, Samarpita Saha, Payel Mukherjee, Sreelekshmi Ms, Jayesh Jain, Sofia Banu, Malini Nemalikanti, Sriram Sudarsanam, Ankit Mukherjee, Bani Jolly, Jupita Handique, V Jothibasu, S Karthik, Divya Tej Sowpati, Sanjay Deshpande, Deepak T Nair, Saurabh Raghuvanshi, Asmita Gupta, Sumedha Avadhanula, Imlimaong Aier, Rahul Semwal, B S Sanjeev, Ajeya Bhat, Nagakishore Jammula, Sai Manasa Chadalavada, Nirmal Singh Mahar, Jyoti Sharma, Rajveer Singh Shekhawat, Soham Biswas, Ayam Gupta, Harshita Agarwal, Venkatesh Kamaraj, Agastya Singh

Affiliations

¹ BRIC - National Institute of Biomedical Genomics (BRIC-NIBMG), Kolkata, India.
² Centre for Brain Research (CBR), IISc Campus, Bengaluru, India.
³ Manipal Academy of Higher Education, Karnataka, India.
⁴ CSIR - Institute of Genomics & Integrative Biology (CSIR-IGIB), New Delhi, India.
⁵ CSIR - Centre for Cellular and Molecular Biology (CSIR-CCMB), Hyderabad, India.
⁶ All India Institute of Medical Sciences (AIIMSJ), Jodhpur, India.
⁷ BRIC - Institute of Bioresources & Sustainable Development (BRIC-IBSD), Imphal, India.
⁸ BRIC - Institute of Life Sciences (BRIC-ILS), Bhubaneswar, India.
⁹ BRIC - Rajiv Gandhi Centre for Biotechnology (BRIC-RGCB), Thiruvananthapuram, India.
¹⁰ Gujarat Biotechnology Research Centre (GBRC), Gandhinagar, India.
¹¹ Indian Institute of Science Education and Research (IISER), Pune, India.
¹² Mizoram University (MZU), Aizawl, India.
¹³ National Institute of Mental Health & Neurosciences (NIMHANS), Bengaluru, India.
¹⁴ Sher-i-Kashmir Institute of Medical Sciences (SKIMS), Srinagar, India.
¹⁵ Vinoba Bhave University, Hazaribagh, India.
¹⁶ BRIC - Centre for DNA Fingerprinting and Diagnostics (BRIC-CDFD), Hyderabad, India.
¹⁷ Indian Institute of Information Technology (IIITA), Allahabad, India.
¹⁸ Indian Institute of Science (IISc), Bengaluru, India.
¹⁹ Indian Institute of Technology Delhi (IITD), New Delhi, India.
²⁰ Indian Institute of Technology Jodhpur (IITJ), Jodhpur, India.
²¹ Indian Institute of Technology Madras (IITM), Chennai, India.
²² National Centre for Biological Sciences (NCBS), Bengaluru, India.
²³ CSIR - Centre for Cellular and Molecular Biology (CSIR-CCMB), Hyderabad, India. thangs@ccmb.res.in.
²⁴ CSIR - Centre for Cellular and Molecular Biology (CSIR-CCMB), Hyderabad, India. tej@ccmb.res.in.
²⁵ CSIR - Institute of Genomics & Integrative Biology (CSIR-IGIB), New Delhi, India. faruq.mohd@igib.in.
²⁶ BRIC - National Institute of Biomedical Genomics (BRIC-NIBMG), Kolkata, India. ab1@nibmg.ac.in.
²⁷ Centre for Brain Research (CBR), IISc Campus, Bengaluru, India. bratati@cbr-iisc.ac.in.

^# Contributed equally.

PMID: 40200122
DOI: 10.1038/s41588-025-02153-x

No abstract available

Grants and funding

BT/GenomeIndia/2018/Department of Biotechnology, Ministry of Science and Technology (DBT)