Natural products chlorotonils exert a complex antibacterial mechanism and address multiple targets

Cell Chem Biol. 2025 Apr 17;32(4):586-602.e15. doi: 10.1016/j.chembiol.2025.03.005. Epub 2025 Apr 8.

Abstract

Antimicrobial resistance is a threat to human health rendering current first-line antibiotics ineffective. New agents overcoming resistance mechanisms are urgently needed to guarantee successful treatment of human disease in the future. Chlorotonils, a natural product class with yet unknown mode of action, were shown to have broad-spectrum activity against multi-resistant Gram-positive bacteria and the malaria parasite Plasmodium falciparum, with promising activity and safety in murine infection models. Here, we report that chlorotonils can target the cell membrane, cell wall, and protein biosynthesis. They can be characterized by a rapid onset of action via interference with ion homeostasis leading to membrane depolarization, however, without inducing severe barrier failure or cellular lysis. Further characterization confirmed binding of chlorotonils to bacterial membrane lipids eventually leading to uncontrolled potassium transport. Additionally, we identified functional inhibition of the peptidoglycan biosynthesis protein YbjG and methionine aminopeptidase MetAP as secondary targets of chlorotonils.

Keywords: Antibiotics; MetAP; YbjG; antimicrobial resistance; chlorotonil; lipids; membrane; mode of action; natural product; proteomics.

MeSH terms

  • Animals
  • Anti-Bacterial Agents* / chemistry
  • Anti-Bacterial Agents* / pharmacology
  • Biological Products* / chemistry
  • Biological Products* / pharmacology
  • Cell Membrane / drug effects
  • Cell Membrane / metabolism
  • Cell Wall / drug effects
  • Cell Wall / metabolism
  • Gram-Positive Bacteria / drug effects
  • Humans
  • Mice
  • Microbial Sensitivity Tests
  • Plasmodium falciparum / drug effects

Substances

  • Anti-Bacterial Agents
  • Biological Products