In vivo functional screens reveal KEAP1 loss as a driver of chemoresistance in small cell lung cancer

Sci Adv. 2025 Apr 25;11(17):eadq7084. doi: 10.1126/sciadv.adq7084. Epub 2025 Apr 23.

Abstract

Exquisitely chemosensitive initially, small cell lung cancer (SCLC) exhibits dismal outcomes owing to rapid transition to chemoresistance. Elucidating the genetic underpinnings has been challenging owing to limitations with cellular models. As SCLC patient-derived xenograft (PDX) models mimic therapeutic responses, we perform genetic screens in chemosensitive PDX models to identify drivers of chemoresistance. cDNA overexpression screens identify MYC, MYCN, and MYCL, while CRISPR deletion screens identify KEAP1 loss as driving chemoresistance. Deletion of KEAP1 switched a chemosensitive SCLC PDX model to become chemoresistant and resulted in sensitivity to inhibition of glutamine metabolism. Data from the IMpower133 clinical trial revealed ~6% of patients with extensive-stage SCLC exhibit KEAP1 genetic alterations, with activation of a KEAP1/NRF2 transcriptional signature associated with reduced survival upon chemotherapy treatment. While roles for KEAP1/NRF2 have been unappreciated in SCLC, our genetic screens revealed KEAP1 loss as a driver of chemoresistance, while patient genomic analyses demonstrate clinical importance.

MeSH terms

  • Animals
  • CRISPR-Cas Systems
  • DNA, Complementary / analysis
  • Drug Resistance, Neoplasm*
  • Female
  • HEK293 Cells
  • Humans
  • Immunologic Deficiency Syndromes
  • Kelch-Like ECH-Associated Protein 1* / genetics
  • Lung Neoplasms* / drug therapy
  • Lung Neoplasms* / genetics
  • Male
  • Mice
  • Proto-Oncogene Proteins c-myc / metabolism
  • Signal Transduction
  • Small Cell Lung Carcinoma* / drug therapy
  • Small Cell Lung Carcinoma* / genetics

Substances

  • KEAP1 protein, human
  • Kelch-Like ECH-Associated Protein 1
  • DNA, Complementary
  • MYC protein, human
  • Proto-Oncogene Proteins c-myc