Rational design of synthetic antimicrobial peptides based on the Escherichia coli ShoB toxin

Sci Rep. 2025 Apr 24;15(1):14354. doi: 10.1038/s41598-025-98330-3.

Abstract

Antibiotic resistance is an escalating global concern, necessitating the development of novel antibiotics with unique mechanisms of action, and preferably also with a lowered propensity for resistance development. Type-I Toxin-Antitoxin (TA) systems that are ubiquitous in bacterial genomes consist of a genetic toxin element encoding a hydrophobic peptide and an antitoxin element producing an sRNA that inhibits the toxin translation. Although the biological roles of these membrane-associated toxins remain incompletely understood, their inherent lethality upon overexpression suggests a potential as antimicrobial agents. In this study, we explore the ShoB toxin from the shoB-ohsC TA system in Escherichia coli (E. coli) as a basis for designing synthetic antimicrobial peptides for exogenous delivery. We demonstrate that ShoB-derived peptides can retain antimicrobial efficacy when modified into shorter, cationic analogs with enhanced solubility. Our most promising hits exhibit rapid bactericidal action and frequency of resistance within E. coli cultures indicate a limited tendency for resistance development. These findings highlight that type-I TA systems constitute a novel source of potential peptide-based antibiotics, thereby offering an alternative largely unexplored strategy to combat antibiotic-resistant bacterial infections.

Keywords: Antibacterial efficacy; Antimicrobial resistance; Peptide antibiotic development; Peptide design; Synthetic antimicrobial peptides; Type-I Toxin-Antitoxin systems.

MeSH terms

  • Anti-Bacterial Agents* / chemical synthesis
  • Anti-Bacterial Agents* / chemistry
  • Anti-Bacterial Agents* / pharmacology
  • Antimicrobial Peptides* / chemical synthesis
  • Antimicrobial Peptides* / chemistry
  • Antimicrobial Peptides* / pharmacology
  • Bacterial Toxins* / chemistry
  • Bacterial Toxins* / genetics
  • Drug Design
  • Escherichia coli Proteins* / chemistry
  • Escherichia coli Proteins* / genetics
  • Escherichia coli Proteins* / metabolism
  • Escherichia coli* / drug effects
  • Escherichia coli* / genetics
  • Escherichia coli* / metabolism
  • Microbial Sensitivity Tests
  • Toxin-Antitoxin Systems

Substances

  • Escherichia coli Proteins
  • Antimicrobial Peptides
  • Bacterial Toxins
  • Anti-Bacterial Agents