BiaPy: accessible deep learning on bioimages

Daniel Franco-Barranco; Jesús A Andrés-San Román; Ivan Hidalgo-Cenalmor; Lenka Backová; Aitor González-Marfil; Clément Caporal; Anatole Chessel; Pedro Gómez-Gálvez; Luis M Escudero; Donglai Wei; Arrate Muñoz-Barrutia; Ignacio Arganda-Carreras

doi:10.1038/s41592-025-02699-y

BiaPy: accessible deep learning on bioimages

Nat Methods. 2025 Apr 29. doi: 10.1038/s41592-025-02699-y. Online ahead of print.

Authors

Daniel Franco-Barranco^{1

2

3

4}, Jesús A Andrés-San Román^{5

6}, Ivan Hidalgo-Cenalmor^{4

7}, Lenka Backová^{4

8}, Aitor González-Marfil^{3

4}, Clément Caporal⁹, Anatole Chessel⁹, Pedro Gómez-Gálvez^{1

2

5

6}, Luis M Escudero^{5

6}, Donglai Wei¹⁰, Arrate Muñoz-Barrutia^{11

12}, Ignacio Arganda-Carreras^{13

14

15

16}

Affiliations

¹ MRC Laboratory of Molecular Biology, University of Cambridge, Cambridge, UK.
² Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK.
³ Donostia International Physics Center (DIPC), San Sebastian, Spain.
⁴ Department of Computer Science and Artificial Intelligence, University of the Basque Country (UPV/EHU), San Sebastian, Spain.
⁵ Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Rocío/CSIC/Universidad de Sevilla and Departamento de Biología Celular, Facultad de Biología, Universidad de Sevilla, Seville, Spain.
⁶ Biomedical Network Research Centre on Neurodegenerative Diseases (CIBERNED), Madrid, Spain.
⁷ Instituto Gulbenkian de Ciência, Oeiras, Portugal.
⁸ Biofisika Institute (CSIC-UPV/EHU), Leioa, Spain.
⁹ Laboratoire d'Optique et Biosciences, CNRS, Inserm, Ecole Polytechnique, Institut Polytechnique de Paris, Palaiseau, France.
¹⁰ Department of Computer Science, Boston College, Boston, MA, USA.
¹¹ Departamento de Bioingenieria, Universidad Carlos III de Madrid, Madrid, Spain. mamunozb@ing.uc3m.es.
¹² Area de Bioingenieria, Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain. mamunozb@ing.uc3m.es.
¹³ Donostia International Physics Center (DIPC), San Sebastian, Spain. iargandacarreras@gmail.com.
¹⁴ Department of Computer Science and Artificial Intelligence, University of the Basque Country (UPV/EHU), San Sebastian, Spain. iargandacarreras@gmail.com.
¹⁵ Biofisika Institute (CSIC-UPV/EHU), Leioa, Spain. iargandacarreras@gmail.com.
¹⁶ IKERBASQUE, Basque Foundation for Science, Bilbao, Spain. iargandacarreras@gmail.com.

PMID: 40301624
DOI: 10.1038/s41592-025-02699-y

No abstract available

Publication types

Letter

Grants and funding

GIU23/022/Euskal Herriko Unibertsitatea (University of the Basque Country)