Genetic disruption of the circadian gene Bmal1 in the intestinal epithelium reduces colonic inflammation

EMBO Rep. 2025 Jun;26(12):3138-3161. doi: 10.1038/s44319-025-00464-y. Epub 2025 Apr 30.

Abstract

Disruption of the circadian clock is associated with the development of inflammatory bowel disease (IBD), but the underlying mechanisms remain unclear. Here, we observe that mice in the early active phase (Zeitgeber time 12, ZT12) of the circadian clock are more tolerant to dextran sodium sulfate (DSS)-induced colitis, compared to those in the early resting phase (ZT0). The expression of the circadian gene Bmal1 peaks in the early resting phase and declines in the early active phase. Bmal1 knockout in the intestinal epithelium reduces DSS-induced inflammatory symptoms. Mechanistically, BMAL1 promotes apoptosis by binding to apoptosis-related genes, including Bax, p53, and Bak1, and promotes their expression. Intriguingly, we observe circadian apoptotic rhythms in the homeostatic intestinal epithelium, while Bmal1 deletion reduces cell apoptosis. Consistently, reducing Bmal1 expression by the REV-ERBα agonist SR9009 has the best therapeutic efficacy against DSS-induced colitis at ZT0. Collectively, our data demonstrate that the Bmal1-centered circadian clock is involved in intestinal injury repair.

Keywords: Bmal1; Circadian Rhythm; Colitis; Intestinal Homeostasis.

MeSH terms

  • ARNTL Transcription Factors* / genetics
  • ARNTL Transcription Factors* / metabolism
  • Animals
  • Apoptosis / genetics
  • Circadian Clocks* / genetics
  • Circadian Rhythm* / genetics
  • Colitis* / chemically induced
  • Colitis* / genetics
  • Colitis* / metabolism
  • Colitis* / pathology
  • Colon / metabolism
  • Colon / pathology
  • Dextran Sulfate
  • Disease Models, Animal
  • Gene Expression Regulation
  • Inflammation / genetics
  • Intestinal Mucosa* / metabolism
  • Intestinal Mucosa* / pathology
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Mice, Knockout
  • bcl-2 Homologous Antagonist-Killer Protein / genetics
  • bcl-2 Homologous Antagonist-Killer Protein / metabolism

Substances

  • ARNTL Transcription Factors
  • Bmal1 protein, mouse
  • Dextran Sulfate
  • bcl-2 Homologous Antagonist-Killer Protein