A systematic review of emerging RNA markers in thyroid fine needle aspiration cytology samples: advancements and challenges

Endocrine. 2025 Aug;89(2):365-379. doi: 10.1007/s12020-025-04266-z. Epub 2025 May 9.

Abstract

Background: Significant advances have been made in detecting RNA markers that may indicate malignancy in fine needle aspiration cytology (FNAC) samples.

Objective: To review the roles of protein-coding and non-coding RNAs in differentiating between malignant and benign thyroid nodules.

Methods: A comprehensive literature search using PubMed, Science Direct, Web of Science, and SCOPUS databases was performed. We searched up until September 2024 and complemented by manual citation search.

Results: A total of 28 full-text articles were reviewed, encompassing 5770 FNAC samples, which included 3489 benign lesions and 2281 malignant lesions. The studies identified 43 messenger RNAs (mRNAs), 16 microRNAs (miRNAs), and 3 long non-coding RNAs (lncRNAs) that have the potential to distinguish malignant nodules. Among the mRNAs, PAPPA, TIMP1, and HMGA2, as well as the miRNAs, miR-146b, miR-375 and miR-222, appear to be the most promising molecules for diagnosis.

Conclusion: Numerous RNA markers have been shown to differentiate malignant from benign lesions. However, there is still a lack of patient-specific classification for thyroid cancer subtypes. Additionally, future studies should prioritize using a combination of molecular markers rather than relying on individual ones. Although current research mainly focuses on identifying cancer-specific molecules, it is important for future studies to shift towards a more patient-specific approach.

Keywords: Diagnosis; Fine-needle aspiration; Molecular marker; Thyroid cancer; lncRNAs; miRNAs.

Publication types

  • Systematic Review

MeSH terms

  • Biomarkers, Tumor* / genetics
  • Biopsy, Fine-Needle
  • Humans
  • MicroRNAs
  • RNA, Messenger
  • Thyroid Gland* / pathology
  • Thyroid Neoplasms* / diagnosis
  • Thyroid Neoplasms* / genetics
  • Thyroid Neoplasms* / pathology
  • Thyroid Nodule* / diagnosis
  • Thyroid Nodule* / genetics
  • Thyroid Nodule* / pathology

Substances

  • Biomarkers, Tumor
  • MicroRNAs
  • RNA, Messenger