Laboratory mice engrafted with natural gut microbiota possess a wildling-like phenotype

Nat Commun. 2025 Jun 12;16(1):5301. doi: 10.1038/s41467-025-60554-2.

Abstract

Conventional laboratory mice housed under specific pathogen-free (SPF) conditions are the standard model in biomedical research. However, in recent years, many rodent-based studies have been deemed irreproducible, raising questions about the suitability of mice as model organisms. Emerging evidence indicates that variability in SPF microbiota plays a significant role in data inconsistencies across laboratories. Although efforts have been made to standardize microbiota, existing microbial consortia lack the complexity and resilience necessary to replicate interactions in free-living mammals. We present a robust, feasible and standardizable approach for transplanting natural gut microbiota from wildlings into laboratory mice. Following engraftment, these TXwildlings adopt a structural and functional wildling-like microbiota and host physiology toward a more mature immune system, with characteristics similar to those of adult humans. We anticipate that adopting wild mouse-derived microbiota as standard for laboratory mouse models will improve the reproducibility and generalizability of basic and preclinical biomedical research.

MeSH terms

  • Animals
  • Fecal Microbiota Transplantation* / methods
  • Female
  • Gastrointestinal Microbiome* / immunology
  • Gastrointestinal Microbiome* / physiology
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Models, Animal
  • Phenotype
  • Specific Pathogen-Free Organisms