Prevalence and risk factors of concurrent bacteremia in children under 5 years of age hospitalized with viral lower respiratory tract infections

Eur J Clin Microbiol Infect Dis. 2025 Oct;44(10):2447-2455. doi: 10.1007/s10096-025-05211-8. Epub 2025 Jul 10.

Abstract

Purpose: We aimed to investigate the prevalence and risk factors of concurrent bacteremia in otherwise healthy children under 5 years of age hospitalized with PCR-confirmed viral lower respiratory tract infections (VLRTIs), and to assess the impact of the COVID-19 pandemic on its prevalence and etiology.

Methods: This retrospective study included children (≤ 5 years) hospitalized with PCR-confirmed VLRTIs between January 2018 and December 2024. Based on microbiology results obtained within 24 h of admission, we assessed the presence of concurrent, community-acquired bacteremia. Risk factors for bacteremia were evaluated using multivariate logistic regression.

Results: Among 1845 patients, concurrent bacteremia was identified in 36 (1.9%) patients with influenza- and respiratory syncytial virus (RSV)-associated LRTIs. Age ≤ 6 months [adjusted odds ratio (aOR) 14.6, 95% confidence interval (CI) 5.7-37.5], C-reactive protein (CRP) ≥ 4 mg/dL (aOR 3.9, 95% CI 1.5-9.8), fever (≥ 39 °C) (aOR 4.8, 95% CI 1.3-18.0), and the need for advanced respiratory support (aOR 8.3, 95% CI 3.0-23.2) were independently associated with an increased risk of bacteremia. In the post-pandemic period, a significant shift in pathogen distribution was observed, with gram-negative bacteria, particularly Klebsiella spp., emerging as the predominant cause of bacteremia.

Conclusion: Although rare, concurrent bacteremia was associated with high fever, elevated CRP levels, the need for advanced respiratory support, and an age of ≤ 6 months in children hospitalized with RSV and influenza associated LRTIs. Notably, gram-negative bacteria, particularly Klebsiella spp., emerged as predominant pathogens in the post-pandemic period, suggesting a potential shift in the epidemiology of bacteremia associated with VLRTIs.

Keywords: Klebsiella spp; COVID-19; Children; Concurrent bacteremia; Viral lower respiratory tract infections.

MeSH terms

  • Bacteremia* / epidemiology
  • Bacteremia* / microbiology
  • COVID-19* / epidemiology
  • Child, Preschool
  • Female
  • Hospitalization
  • Humans
  • Infant
  • Infant, Newborn
  • Influenza, Human / epidemiology
  • Male
  • Prevalence
  • Respiratory Syncytial Virus Infections / epidemiology
  • Respiratory Tract Infections* / complications
  • Respiratory Tract Infections* / epidemiology
  • Respiratory Tract Infections* / microbiology
  • Respiratory Tract Infections* / virology
  • Retrospective Studies
  • Risk Factors
  • SARS-CoV-2