Associations between donor-derived cell-free DNA dynamics and clinical outcomes after kidney allograft rejection: A prospective, multicenter study

Am J Transplant. 2025 Dec;25(12):2543-2553. doi: 10.1016/j.ajt.2025.07.2470. Epub 2025 Jul 23.

Abstract

Active rejection (AR) remains a major risk factor for graft dysfunction and loss. Donor-derived cell-free DNA (dd-cfDNA) is a dynamic, noninvasive biomarker for AR. We hypothesized that dd-cfDNA monitoring post-rejection may enable physicians to stratify patients into those with more and less favorable prognoses. This prospective multicenter study of kidney transplant recipients (KTRs) with biopsy-proven AR (BPAR) monitored dd-cfDNA for 8 weeks following diagnosis and recorded clinical outcomes at 12 months. Patients were classified using dd-cfDNA trends; trends were then associated with outcomes. Negative outcomes comprised graft loss, subsequent BPAR, post-biopsy donor-specific antibody, and/or lack of resolution of renal dysfunction. Out of 488 KTRs, 66 with BPAR were analyzed (T cell-mediated rejection, n = 37; antibody-mediated rejection, n = 24; and mixed rejection, n = 5). A total of 76% experienced negative outcomes, and 24% experienced positive outcomes. Four distinct dd-cfDNA trends were identified: 2 with a favorable prognosis (n = 25) and 2 with an unfavorable prognosis (n = 41). Among patients with a favorable prognosis, the odds of experiencing positive outcomes were 60× higher (P = 3.18 × 10-7) and of experiencing resolving kidney dysfunction at 1 year were 13× higher (P = 2.15 × 10-5). Among KTRs with BPAR, post-rejection dd-cfDNA trends were statistically associated with outcomes, suggesting that dd-cfDNA may help physicians manage patients post-BPAR.

Keywords: biopsy-proven rejection; clinical outcomes; dd-cfDNA; kidney allograft rejection.

Publication types

  • Multicenter Study

MeSH terms

  • Adult
  • Biomarkers* / blood
  • Cell-Free Nucleic Acids* / blood
  • Cell-Free Nucleic Acids* / genetics
  • Female
  • Follow-Up Studies
  • Glomerular Filtration Rate
  • Graft Rejection* / blood
  • Graft Rejection* / diagnosis
  • Graft Rejection* / etiology
  • Graft Rejection* / pathology
  • Graft Survival
  • Humans
  • Kidney Failure, Chronic* / surgery
  • Kidney Function Tests
  • Kidney Transplantation* / adverse effects
  • Male
  • Middle Aged
  • Postoperative Complications*
  • Prognosis
  • Prospective Studies
  • Risk Factors
  • Tissue Donors*

Substances

  • Cell-Free Nucleic Acids
  • Biomarkers