Ints7 deficiency activates DNA damage response to elicit resurgence of endogenous retrovirus MERVL and anastasis of embryonic stem cells

Nucleic Acids Res. 2025 Aug 11;53(15):gkaf797. doi: 10.1093/nar/gkaf797.

Abstract

The murine endogenous retrovirus MERVL is dynamically activated in a small population of in vitro cultured mouse embryonic stem cells (mESCs) exhibiting totipotent-like features. Yet, the relationship between MERVL activation and cell fate decisions of mESCs is incompletely understood. Through a genome-wide knockout screen, we discovered that MERVL activity is intrinsically linked to DNA damage response pathways. Loss of Ints7, a backbone subunit of the Integrator complex, increased DNA damage and triggered MERVL expression. Mechanistically, Ints7 depletion induced phosphorylation of Kap1, increased chromatin accessibility at MERVL loci, and activated the p53-Dux axis to drive MERVL transcription. Intriguingly, DNA damage-induced MERVL resurgence followed the cleavage of caspase-3, often accompanying a process known as anastasis-cell survival after transient apoptotic signaling. Collectively, our study uncovered that MERVL activation in mESCs is integrated into the cellular circuit for decision-making in response to DNA damage, suggesting that sublethal caspase activation can influence the developmental potential of stem cells.

MeSH terms

  • Animals
  • Apoptosis / genetics
  • Caspase 3 / genetics
  • Caspase 3 / metabolism
  • Chromatin / metabolism
  • DNA Damage*
  • DNA-Binding Proteins* / genetics
  • Embryonic Stem Cells / metabolism
  • Endogenous Retroviruses* / genetics
  • Mice
  • Mouse Embryonic Stem Cells* / cytology
  • Mouse Embryonic Stem Cells* / metabolism
  • Mouse Embryonic Stem Cells* / virology
  • Phosphorylation
  • Signal Transduction
  • Tripartite Motif-Containing Protein 28 / metabolism
  • Tumor Suppressor Protein p53 / genetics
  • Tumor Suppressor Protein p53 / metabolism

Substances

  • Tumor Suppressor Protein p53
  • Tripartite Motif-Containing Protein 28
  • Trim28 protein, mouse
  • Caspase 3
  • Trp53 protein, mouse
  • Chromatin
  • DNA-Binding Proteins