Multichassis Expression of Cyanobacterial and Other Bacterial Biosynthetic Gene Clusters

ACS Synth Biol. 2025 Sep 19;14(9):3356-3361. doi: 10.1021/acssynbio.5c00390. Epub 2025 Sep 2.

Abstract

Heterologous expression of biosynthetic gene clusters (BGCs) is a powerful strategy for natural product (NP) discovery, yet achieving consistent expression across microbial hosts remains challenging. Here, we developed cross-phyla vector systems enabling the expression of BGCs from cyanobacteria and other bacterial origins in Gram-negative Escherichia coli, Gram-positive Bacillus subtilis, and two model cyanobacterial strains including unicellular Synechocystis PCC 6803 and filamentous Anabaena sp. PCC 7120. Following validation using constitutive and inducible expression of the enhanced yellow fluorescent protein (eYFP), we applied these vectors to express the shinorine and violacein BGCs in all four hosts. Promoter tuning, substrate feeding, BGC refactoring, and inducible control enhanced NP production and mitigated host toxicity. Notably, we demonstrated that B. subtilis can serve as a chassis for cyanobacterial NP BGC expression. Our results provide versatile expression platforms for probing BGC function and accelerating natural product discovery from diverse cyanobacterial and other bacterial lineages.

Keywords: Biosynthetic gene clusters; broad-host-range vectors; cyanobacteria; mycosporine-like amino acids; synthetic biology; violacein.

MeSH terms

  • Bacillus subtilis / genetics
  • Bacillus subtilis / metabolism
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Biological Products / metabolism
  • Cyanobacteria* / genetics
  • Cyanobacteria* / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression Regulation, Bacterial
  • Indoles / metabolism
  • Luminescent Proteins / genetics
  • Luminescent Proteins / metabolism
  • Multigene Family* / genetics
  • Promoter Regions, Genetic / genetics
  • Synechocystis / genetics
  • Synechocystis / metabolism

Substances

  • Bacterial Proteins
  • Biological Products
  • violacein
  • Luminescent Proteins
  • Indoles
  • yellow fluorescent protein, Bacteria