Nuclear glycine decarboxylase suppresses STAT1-dependent MHC-I and promotes cancer immune evasion

EMBO J. 2025 Oct;44(20):5712-5733. doi: 10.1038/s44318-025-00557-3. Epub 2025 Sep 8.

Abstract

Inadequate antigen presentation by MHC-I in tumor microenvironment (TME) is a common immune escape mechanism. Here, we show that glycine decarboxylase (GLDC), a key enzyme in glycine metabolism, functions as an inhibitor of MHC-I expression in EGFR-activated tumor cells to induce immune escape by a mechanism independent of its enzymatic activity. Upon EGFR activation, GLDC is phosphorylated by SRC and subsequently translocated to the nucleus in human NSCLC cells. Nuclear GLDC sequesters STAT1 co-activator SMARCE1, inhibiting STAT1-dependent transcription of the inflammatory genes IRF1 and NLRC5. Further, GLDC recruits DNMT1 to the IRF1/NLRC5 promoter inducing DNA hypermethylation, suppressing transcription of downstream MHC-I genes. Inhibition of GLDC restores MHC-I levels in tumor cells, improves tumor-specific CD8+ T cells functions in the TME, and rescues anti-tumor effects of PD-1 blockade therapy in mice. Our findings reveal a non-enzymatic nuclear function for GLDC in the suppression of MHC-I antigen presentation, suggesting new strategies for ICB-based combination immunotherapy.

Keywords: EGFR Activation; GLDC; ICB Therapy; Immune Escape; MHC-I Antigen Presentation.

MeSH terms

  • Animals
  • Antigen Presentation
  • CD8-Positive T-Lymphocytes / immunology
  • Carcinoma, Non-Small-Cell Lung* / genetics
  • Carcinoma, Non-Small-Cell Lung* / immunology
  • Carcinoma, Non-Small-Cell Lung* / pathology
  • Cell Line, Tumor
  • Cell Nucleus
  • Gene Expression Regulation, Neoplastic
  • Histocompatibility Antigens Class I* / genetics
  • Histocompatibility Antigens Class I* / immunology
  • Histocompatibility Antigens Class I* / metabolism
  • Humans
  • Immune Evasion*
  • Interferon Regulatory Factor-1 / genetics
  • Interferon Regulatory Factor-1 / metabolism
  • Lung Neoplasms* / immunology
  • Lung Neoplasms* / pathology
  • Mice
  • STAT1 Transcription Factor* / genetics
  • STAT1 Transcription Factor* / immunology
  • STAT1 Transcription Factor* / metabolism
  • Tumor Escape*
  • Tumor Microenvironment / immunology

Substances

  • STAT1 Transcription Factor
  • STAT1 protein, human
  • Histocompatibility Antigens Class I
  • Interferon Regulatory Factor-1
  • IRF1 protein, human