A novel XPNPEP3 gene variant manifesting as rhabdomyolysis and exercise intolerance

J Neuromuscul Dis. 2026 Jul;13(4):774-780. doi: 10.1177/22143602251352986. Epub 2025 Sep 15.

Abstract

Biallelic mutations in XPNPEP3 gene, encoding a mitochondrial peptidase, mainly cause nephronophthisis, but associated muscle involvement remains poorly described. We report here a 44-year-old male presenting since childhood with exercise intolerance and recurrent rhabdomyolysis. Electroneuromyography revealed a sensory axonal neuropathy and brain MRI showed white matter lesions in the posterior cranial fossa. Muscle biopsy revealed ragged-red fibers, COX negative fibers and abnormal mitochondria in electron microscopy. Whole genome sequencing identified a homozygous frameshift variant in the XPNPEP3 gene. Our results expand the spectrum associated with XPNPEP3 variants, including metabolic myopathy with subclinical central and peripheral nervous system involvement.

Keywords: XPNPEP3; mitochondrial myopathies; muscular diseases; myalgia; rhabdomyolysis.

Publication types

  • Case Reports

MeSH terms

  • Adult
  • Exercise Tolerance* / genetics
  • Humans
  • Male
  • Muscle, Skeletal / pathology
  • Rhabdomyolysis* / genetics
  • Rhabdomyolysis* / pathology
  • Rhabdomyolysis* / physiopathology