Translesion polymerases and DNA-protein crosslink repair shapes the cellular response to formaldehyde-induced DNA damage in ssDNA

Nucleic Acids Res. 2025 Sep 5;53(17):gkaf914. doi: 10.1093/nar/gkaf914.

Abstract

Formaldehyde (FA) is a highly reactive aldehyde that forms a variety of adducts with biomolecules, including DNA base adducts, interstrand crosslinks, intrastrand crosslinks, and DNA-protein crosslinks (DPCs). FA is produced from several exogenous and endogenous sources and has been linked to many cancer types. Persistent adducts are often bypassed by error-prone translesion synthesis (TLS) polymerases, causing mutations that contribute to the FA-induced mutational spectrum. However, it is unknown how DPC repair and TLS coordinate to bypass FA damage, and how bypass by different TLS polymerases alters FA's mutational spectrum. Here, we use an established yeast mutational reporter system to confirm that FA preferentially mutagenizes guanine residues within single-stranded DNA (ssDNA). We find that functional TLS prevents chromosomal instability following FA exposure and that FA-induced chromosomal rearrangements are dependent on DPC repair. Finally, we find that the TLS polymerases Rev1 and Pol η function together to prevent FA mutagenesis. Overall, these results outline the mechanisms by which TLS and DPC repair coordinate to bypass FA-induced ssDNA damage.

MeSH terms

  • Cross-Linking Reagents / toxicity
  • DNA Adducts
  • DNA Damage*
  • DNA Repair*
  • DNA, Single-Stranded* / chemistry
  • DNA, Single-Stranded* / genetics
  • DNA, Single-Stranded* / metabolism
  • DNA-Directed DNA Polymerase* / genetics
  • DNA-Directed DNA Polymerase* / metabolism
  • Formaldehyde* / toxicity
  • Mutagenesis
  • Mutation
  • Nucleotidyltransferases* / genetics
  • Nucleotidyltransferases* / metabolism
  • Saccharomyces cerevisiae / drug effects
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism
  • Y-Family DNA Polymerases

Substances

  • Formaldehyde
  • DNA-Directed DNA Polymerase
  • DNA, Single-Stranded
  • Saccharomyces cerevisiae Proteins
  • Nucleotidyltransferases
  • DNA Adducts
  • Cross-Linking Reagents
  • REV1 protein, S cerevisiae
  • Y-Family DNA Polymerases
  • Rad30 protein