A multimodal cross-species comparison of pancreas development

Nat Commun. 2025 Oct 22;16(1):9355. doi: 10.1038/s41467-025-64774-4.

Abstract

Human pancreas development remains incompletely characterized due to restricted sample access. We investigate whether pigs resemble humans in pancreas development, offering a complementary large-animal model. As pig pancreas organogenesis is unexplored, we first annotate developmental hallmarks throughout its 114-day gestation. Building on this, we construct a pig single-cell multiome pancreas atlas across all trimesters. Cross-species comparisons reveal pigs resemble humans more closely than mice in developmental tempo, epigenetic and transcriptional regulation, and gene regulatory networks. This further extends to progenitor dynamics and endocrine fate acquisition. Transcription factors regulated by NEUROG3, the endocrine master regulator, are over 50% conserved between pig and human, many being validated in human stem cell models. Notably, we uncover that during embryonic development, emerging beta-cell heterogeneity coincides with a species-conserved primed endocrine cell (PEC) population alongside NEUROG3-expressing cells. Overall, our work lays the foundation for comparative investigations and offers unprecedented insights into evolutionarily conserved pancreas organogenesis mechanisms across animal models.

Publication types

  • Comparative Study

MeSH terms

  • Animals
  • Basic Helix-Loop-Helix Proteins / genetics
  • Basic Helix-Loop-Helix Proteins / metabolism
  • Female
  • Gene Expression Regulation, Developmental
  • Gene Regulatory Networks
  • Humans
  • Insulin-Secreting Cells / cytology
  • Insulin-Secreting Cells / metabolism
  • Mice
  • Nerve Tissue Proteins / genetics
  • Nerve Tissue Proteins / metabolism
  • Organogenesis* / genetics
  • Pancreas* / cytology
  • Pancreas* / embryology
  • Pancreas* / metabolism
  • Single-Cell Analysis
  • Species Specificity
  • Swine

Substances

  • Basic Helix-Loop-Helix Proteins
  • Nerve Tissue Proteins
  • Neurog3 protein, mouse
  • NEUROG3 protein, human