SARS-CoV-2 NSP14 inhibitor exhibits potent antiviral activity and reverses NSP14-driven host modulation

Nat Commun. 2025 Nov 3;16(1):9671. doi: 10.1038/s41467-025-64674-7.

Abstract

SARS-CoV-2 NSP14, an N7-guanosine methyltransferase, plays a critical role in viral RNA capping, enabling viral replication and immune evasion. While NSP14 has emerged as a promising drug target, its role in host-virus crosstalk and the cellular consequences of NSP14 inhibition remain poorly understood. Here, we present the identification and characterization of C10, a highly potent and selective non-nucleoside inhibitor of the NSP14 S-adenosylmethionine (SAM)-binding pocket. C10 demonstrates robust antiviral activity against SARS-CoV-2, including its variants, with EC50 values ranging from 64.03 to 301.9 nM, comparable to the FDA-approved drug remdesivir in our cell-based assays. C10 also exhibits broad-spectrum activity against other betacoronaviruses and inhibits SARS-CoV-2 at the replication stage. C10 suppresses viral translation and exhibits immunostimulatory effect. Additionally, C10 specifically reverses NSP14-mediated alterations in host transcriptome. The antiviral efficacy of C10 is further validated in a transgenic mouse model of SARS-CoV-2 infection. Our findings highlight C10 as a promising candidate for the development of effective treatments against SARS-CoV-2 and its emerging variants. This study also uncovers a novel mechanism of NSP14 in SARS-CoV-2 pathogenesis and its therapeutic potential, providing insights that may extend to other viral capping methyltransferases.

MeSH terms

  • Animals
  • Antiviral Agents* / chemistry
  • Antiviral Agents* / pharmacology
  • COVID-19 / virology
  • COVID-19 Drug Treatment*
  • Chlorocebus aethiops
  • Exoribonucleases
  • HEK293 Cells
  • Host-Pathogen Interactions / drug effects
  • Humans
  • Methyltransferases* / antagonists & inhibitors
  • Methyltransferases* / metabolism
  • Mice
  • Mice, Transgenic
  • S-Adenosylmethionine / metabolism
  • SARS-CoV-2* / drug effects
  • SARS-CoV-2* / genetics
  • SARS-CoV-2* / physiology
  • Vero Cells
  • Viral Nonstructural Proteins* / antagonists & inhibitors
  • Viral Nonstructural Proteins* / genetics
  • Viral Nonstructural Proteins* / metabolism
  • Virus Replication / drug effects

Substances

  • Antiviral Agents
  • Viral Nonstructural Proteins
  • NSP14 protein, SARS-CoV-2
  • Methyltransferases
  • S-Adenosylmethionine
  • Exoribonucleases